Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9j19
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyc...   144   9e-36
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    38   0.002
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    28   1.3  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   1.7  
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    26   3.9  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.1  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    25   9.1  

>SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 183

 Score =  144 bits (349), Expect = 9e-36
 Identities = 72/154 (46%), Positives = 109/154 (70%), Gaps = 3/154 (1%)
 Frame = +1

Query: 166 KVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMR 345
           KVN+EL  LTYG++V+Q+ K+  N E VN+ L+++GYN+G+RLIEDFLA+T   RC + R
Sbjct: 16  KVNAELFVLTYGSIVAQLCKDM-NYEKVNEELDKMGYNIGIRLIEDFLAKTEWPRCADFR 74

Query: 346 ETADKIQQ-AFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN--NGLKYCALI 516
           ET + + +  FK++L+  P ++S S  G+ F L  D  PL+E+VE+P++    L Y  ++
Sbjct: 75  ETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPADARQKLWYSNIL 134

Query: 517 PGAIRGALQMVQLDVQCWFVQDQLKGDPVTELRV 618
            G IRGAL+M+Q+DV   F++D L+GD  TE+RV
Sbjct: 135 CGVIRGALEMLQMDVDAVFLRDILRGDEHTEIRV 168


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
 Frame = +1

Query: 169 VNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTS----TRCL 336
           VN       +  L+ ++  +    ++  + L   GY +G +L+E  + R  +    TR L
Sbjct: 41  VNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELVVWRERNPKRETRIL 100

Query: 337 EMRETADKIQQAFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN-NGLKYCAL 513
            + +        + L+     ++     A DE+ +V ++  L++++ +P   N L  CA 
Sbjct: 101 GILQYIHSSVWKY-LFGKHADSLEKSKEASDEYMIVDNNPLLNKFISVPKEMNQLNCCAY 159

Query: 514 IPGAIRGALQMVQ 552
           + G I G L   Q
Sbjct: 160 LAGIIEGFLDSAQ 172


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 180 LGINFLGVQSRSLPRHFVEMC*RI 109
           LG +F+G +  S  RHF+  C R+
Sbjct: 265 LGADFIGFEDYSYARHFISCCSRV 288


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 331  CLEMRETADKIQQAFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEW 471
            C+E   ++DK+    KL   ++P    W++ GD  +   D   LS W
Sbjct: 1090 CVEFL-SSDKVLNQPKLKADLEPYRIDWANGGDLVNSEKDASELSRW 1135


>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 154 LDAKKVNSELLTLTYGAL--VSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLA 312
           L AKK+ S L+T TYG L  + Q+L   E T  + K +   G   G  LI    A
Sbjct: 59  LKAKKLYSGLITQTYGQLGNIEQLLSTIEFTL-IQKDV-MFGLQEGTNLIRQLQA 111


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 101 VIQILQHISTKCLGKLLDWTPRK 169
           ++QI+  + +K LG++ D TPRK
Sbjct: 532 LLQIVTLLLSKVLGRIFDNTPRK 554


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 202 ALVSQMLKETENTEDVNKHLERIGYNMG--VRLIEDFLARTT 321
           +L   +L   +NT++  +HLE   +N    + +I  FL+R T
Sbjct: 2   SLAFTLLTSKDNTDEDEEHLELSSFNQEKLLEMISVFLSRLT 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,804
Number of Sequences: 5004
Number of extensions: 49196
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)