Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9j19
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1458 + 26677557-26677616,26677712-26677809,26678569-266786... 157 5e-39
03_03_0283 - 16192534-16192656,16192979-16193161,16193336-161934... 157 5e-39
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 31 0.76
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984... 29 2.3
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540... 29 3.1
06_03_1221 - 28514952-28518152 29 4.1
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 28 5.4
06_02_0164 + 12498614-12498699,12498806-12498842,12499388-124995... 28 5.4
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402 28 5.4
01_01_1059 - 8356328-8356645,8357567-8357865,8358119-8358124,835... 28 7.1
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 27 9.4
>07_03_1458 +
26677557-26677616,26677712-26677809,26678569-26678668,
26678841-26679023,26679347-26679469
Length = 187
Score = 157 bits (382), Expect = 5e-39
Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 2/158 (1%)
Frame = +1
Query: 163 KKVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEM 342
++VN+EL TLTYGA+V Q+L + E E+VNK L+++GYN+G RL+++FLA++ +RC++
Sbjct: 18 ERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGTRLVDEFLAKSNVSRCVDF 77
Query: 343 RETADKIQQ-AFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN-NGLKYCALI 516
+ETAD I + FK++L + TVT+W + G S V + PL ++VE+P GL+YC ++
Sbjct: 78 KETADVIAKLGFKMFLGVTATVTNWDAEGTSCSFVLEDNPLVDFVELPDTCQGLQYCNVL 137
Query: 517 PGAIRGALQMVQLDVQCWFVQDQLKGDPVTELRVKYLK 630
G IRGAL+MV + + +V+D L+GD E+RVK K
Sbjct: 138 SGVIRGALEMVSMKTEVTWVRDMLRGDDAYEMRVKLTK 175
>03_03_0283 -
16192534-16192656,16192979-16193161,16193336-16193435,
16194627-16194724,16194841-16194900
Length = 187
Score = 157 bits (382), Expect = 5e-39
Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 2/158 (1%)
Frame = +1
Query: 163 KKVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEM 342
++VN+EL TLTYGA+V Q+L + E E+VNK L+++GYN+G RL+++FLA++ +RC++
Sbjct: 18 ERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGTRLVDEFLAKSNVSRCVDF 77
Query: 343 RETADKIQQ-AFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN-NGLKYCALI 516
+ETAD I + FK++L + TVT+W + G S V + PL ++VE+P GL+YC ++
Sbjct: 78 KETADVIAKLGFKMFLGVTATVTNWDAEGTSCSFVLEDNPLVDFVELPDTCQGLQYCNVL 137
Query: 517 PGAIRGALQMVQLDVQCWFVQDQLKGDPVTELRVKYLK 630
G IRGAL+MV + + +V+D L+GD E+RVK K
Sbjct: 138 SGVIRGALEMVSMKTEVTWVRDMLRGDDAYEMRVKLTK 175
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 31.1 bits (67), Expect = 0.76
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 626 KYFTLNSVTGSPFN*SCTNQHCTSSCTICRAPLIAP 519
+ F ++ G+P N C N +CT +C + + PL P
Sbjct: 521 RQFPCQNLCGNPLN--CGNHYCTKACHVLQIPLSQP 554
>10_08_0939 +
21696941-21697049,21697171-21697255,21698385-21698457,
21698553-21698609,21698660-21698713,21699196-21699246,
21699441-21699503,21700453-21700518,21700625-21700663,
21702190-21702271,21703479-21703536,21703698-21703914,
21704248-21704697
Length = 467
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 166 SW-RPI*KFAETFCRNVLKNLYNFLYSFVKFSKNLLITYA 50
SW P+ + A+T C+ V++NL++F VK K L Y+
Sbjct: 81 SWLMPLQEQADTVCKKVIQNLHHFYLCTVKKMKELRKGYS 120
>08_02_1556 -
27852247-27852738,27853005-27853197,27854006-27854070,
27854161-27854199,27854572-27854592,27854819-27855052,
27855420-27855504,27855953-27856026,27856516-27856647,
27856735-27856834,27857296-27857361,27857472-27857509,
27858013-27858219,27858378-27858427,27858871-27858940,
27859065-27859133,27859456-27859530,27860456-27860530,
27860887-27860934
Length = 710
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 479 ISTHSLSGQWSQTSENSSPALLQLV 405
+ST + + SQTS NSSP LLQ++
Sbjct: 419 VSTSNTTSGQSQTSNNSSPILLQML 443
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 160 AKKVNSELLTLTYGALVSQMLKETENTEDVNKHLE-RIGYNMGVRLIEDFLARTTSTRCL 336
AK N L LTY ++ E+ + K E R+G+N + L+ TS RCL
Sbjct: 273 AKLTNLITLDLTYNMFTGEL---PESISQLTKLEELRLGHNDFTGTLPPALSNWTSLRCL 329
Query: 337 EMRETA 354
++R +
Sbjct: 330 DLRSNS 335
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 304 FLARTTSTRCLEMRETADKIQQAFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMP 483
+LA T +T L++ + D+I ++ PT +S+G+ L WD SEW+
Sbjct: 2705 YLAATGTTIYLDVVDNDDEIYVKLRVSDGASPTRYVMTSSGEFQLLGWDKSS-SEWITFS 2763
Query: 484 S 486
S
Sbjct: 2764 S 2764
>06_02_0164 +
12498614-12498699,12498806-12498842,12499388-12499544,
12499964-12500181,12500965-12501891
Length = 474
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Frame = -3
Query: 309 QEVLYQSNAHVVSDSLKMF---VYIFSVFCFF 223
++VL+Q NA ++S+ M+ VYIFS+FC F
Sbjct: 115 RQVLHQENAEA-ANSVSMWMGTVYIFSLFCAF 145
>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
Length = 566
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 247 VNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKLYLSMQPTVT 408
V+K+L I + G+R + FLA S RE D + +A +YL PT+T
Sbjct: 367 VDKYLGEISPDHGLR-VSKFLAVAESLPD-SARECYDGVYRALDIYLESHPTLT 418
>01_01_1059 -
8356328-8356645,8357567-8357865,8358119-8358124,
8358276-8358720,8359722-8360036
Length = 460
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +1
Query: 202 ALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKL 381
A+ + ++ E E+ KH E + + E+ + R T+ R + R+ + ++Q+FK
Sbjct: 335 AMELAIARDKEEDEENYKHRESLR-----EMRENHMKRVTAMRSMHSRKWDEFLEQSFKR 389
Query: 382 YLSMQPTVTSWSSAGD 429
+ PT + +S D
Sbjct: 390 HQQAHPTSYAQTSYPD 405
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Frame = -2
Query: 220 AFETLKPHM*ELG----ARN*LSWRPI*KFAETFCRNVLKNLYNFLYSFVKFSKNLLITY 53
AF+T K H L A W + TFCR N Y+ L SF +L Y
Sbjct: 260 AFQTNKNHFYSLESSPVAMELTYWPQVSNLVRTFCRKPGMNCYDLLTSFTAVRDGVLTKY 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,341,466
Number of Sequences: 37544
Number of extensions: 302330
Number of successful extensions: 832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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