Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9j19
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 339 F*AASRRSPGQEVLYQSNAHVVSDSLKMFVYIF 241
           F +  +R   Q   +++    VSD++  F Y F
Sbjct: 453 FCSTEKRLTKQNTAFENQLQFVSDAVMAFAYAF 485


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 372 GLLYFISSLSHF*AASRRSPGQEV 301
           GL YF+ S   F A +  +PGQE+
Sbjct: 47  GLEYFLLSAFLFGANALFTPGQEL 70


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +1

Query: 325  TRCLEMRETADKIQQAFKLYLSMQPTVTSWSSAGDEFSLVWDHC 456
            T+  ++  +++ I    K Y +    V +++S GD       HC
Sbjct: 1130 TKDTKITSSSETILHGLKKYTNYSMQVLAFTSGGDGVKSAPIHC 1173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,350
Number of Sequences: 438
Number of extensions: 3089
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)