Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9j18
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    30   0.36 
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   4.4  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.4  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.7  

>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 449 VPAVYKIYDNPIRV*RDSSDYLCHISSQYFRSSSHASCTMVYGEEIENVRKDCPDTTD 622
           +P +YK  D+P+ V   SS ++   S +  R+S H    +  G+    + K C  + D
Sbjct: 163 IPPLYKSVDSPLIV--HSSKFMSDHSQKLLRNSKHGILVVGCGQSAAEIWKHCHYSLD 218


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
 Frame = +3

Query: 255 YTLASFLAIFVVSTTQLIVTNGFLQGLGMGLLIPVSY--TSFNSYFTKKKVLYLS 413
           YT+  F+A+  V +  + + NG+ + LG G+++ + +  TS  +YF+  +VL+ S
Sbjct: 33  YTVWVFIALICVDSN-IKIRNGY-RNLGGGIVLIIFFFITSGLAYFSYFRVLFSS 85


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
 Frame = +3

Query: 258 TLASFLAIFVVSTTQLIVTNGFLQGLGMGLLIPVSYTSFNSYFTKKKVLYLSLCKA---- 425
           + A FLA  +    Q  +    LQG+GM  L  +     +SYF ++  +  S+       
Sbjct: 566 SFAHFLANRLPHQAQFFIDLIVLQGIGMFPLKLIQLGKLSSYFVRRSFVPYSIASKKFET 625

Query: 426 ----SIGLITMLYPLFIKFTITQYGFRGTLAIICAISAHSIFGALV 551
               S+G I +  P+FI      Y     L ++  +  + I G LV
Sbjct: 626 PDSFSVG-IFLPQPMFIMLICLCYSIISPLILVFGL-IYFIIGFLV 669


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +3

Query: 276 AIFVVSTTQLIVTN------GFLQGLGMGLLIPVSYTSFNSYFTKKK 398
           A+F +ST+++I+ N      G  QG  M LL  V   +   +  KK+
Sbjct: 113 ALFSISTSEVIIVNMWENQVGLYQGSNMALLKTVLEVNLQLFHNKKE 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,666
Number of Sequences: 5004
Number of extensions: 60860
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)