Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9j16
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0389 + 17465328-17465712,17465855-17465908,17466061-17468111     29   2.9  
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494...    28   5.0  
07_03_1204 + 24855052-24855210,24855411-24855974,24856157-248562...    28   6.6  
10_08_0843 - 20960249-20960446,20960583-20960987,20961092-209612...    27   8.7  

>10_08_0389 + 17465328-17465712,17465855-17465908,17466061-17468111
          Length = 829

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 306 VRYNIIYNCL-LRGLIIQYQITLRTVRELS*KSRFF 202
           V YN++ N L L+G +IQ +I L ++RE   K R F
Sbjct: 694 VTYNLLINVLCLKGKVIQAEILLESLRENGIKLRKF 729


>01_05_0653 -
           23948911-23948937,23949031-23949141,23949361-23949441,
           23949865-23949984,23950088-23950252,23950344-23950493,
           23950565-23950674,23951401-23951518,23951597-23951827,
           23952345-23952524,23953639-23953908,23954930-23954979,
           23955213-23955288,23955396-23955483,23956010-23956101,
           23956200-23956529,23957484-23957593,23957810-23957907,
           23959538-23959566
          Length = 811

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 427 YVEDVQAKANLSKTTEQMYHH 489
           Y+E  QAKA   K  +Q YHH
Sbjct: 77  YIETQQAKAEHQKQQQQQYHH 97


>07_03_1204 +
           24855052-24855210,24855411-24855974,24856157-24856225,
           24856304-24856426,24856733-24856864,24857143-24857266,
           24857547-24857614,24857849-24857991,24858615-24858722,
           24858826-24858901,24859442-24859578,24859660-24859819,
           24859901-24860080,24860159-24860275,24860540-24860695,
           24861209-24861379,24861479-24861591,24861669-24861792,
           24861961-24862056,24862139-24862201,24862299-24862364
          Length = 982

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 361 DVNFYKLVSEKSDVNIVAGTGFYVEDVQAKANLSKTTEQMYHHMLTELTTGF 516
           D+ +Y    + +D+N++ G   ++     K N  KTT Q     +T    GF
Sbjct: 752 DLKYYTKTRDYTDINVLGGEFAHLPPSMCKTNGVKTTAQANDCKVTTKWFGF 803


>10_08_0843 -
           20960249-20960446,20960583-20960987,20961092-20961232,
           20961324-20961471,20961742-20961863,20962372-20962412,
           20962671-20962839
          Length = 407

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 367 LHPDQDRPSNFPLLYLHRTSCTL*HHLQLPPSRPD-HSIPNY 245
           LHPD D     P   LHR S T        PS+ D  SIP++
Sbjct: 294 LHPDHDNGVRQPETLLHRRSLTAFSPASTVPSQFDKDSIPSH 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,057,323
Number of Sequences: 37544
Number of extensions: 371383
Number of successful extensions: 824
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)