Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9j11
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 29 0.45
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 28 1.0
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 2.4
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 4.2
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 4.2
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 5.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.3
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 9.6
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 29.5 bits (63), Expect = 0.45
Identities = 21/81 (25%), Positives = 33/81 (40%)
Frame = +1
Query: 172 FSLNVFKEHVKPRLLQLFSVRDSQIRMLLLMHFSKYIHVFTHEELSQHILPELLLGIKDT 351
F L E + P+ L + S + RM + S+ E + + ILP L + D
Sbjct: 471 FGLEWATETIIPKFLAMRSHPNYLYRMTTIFAISEIAPALNAEVIEKQILPTLEQLVNDP 530
Query: 352 DDNLVASTLICLSVLVPILGA 414
N+ + VL P+L A
Sbjct: 531 IPNIRFNVAKAFEVLKPVLAA 551
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +1
Query: 163 PGFFSL---NVFKEHVKPRLLQLFSVRDSQIRMLLLMHFSKYIHVFTHEELSQHILPELL 333
PGF L + E + P + +L + +R L M+ E+ ++++LP L
Sbjct: 309 PGFCELLDKRIVLEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFL 368
Query: 334 LGIKDTDDNLVASTLICLSVLVPILG 411
+KD + + + + L V+ ++G
Sbjct: 369 ELLKDENPEVRLNIISKLEVVNKVVG 394
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/73 (21%), Positives = 34/73 (46%)
Frame = +1
Query: 193 EHVKPRLLQLFSVRDSQIRMLLLMHFSKYIHVFTHEELSQHILPELLLGIKDTDDNLVAS 372
E++ P L+L + ++R+ ++ V E LSQ +LP ++ +D + +
Sbjct: 361 EYLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVRLA 420
Query: 373 TLICLSVLVPILG 411
+ + +L LG
Sbjct: 421 IIDYIPLLAQQLG 433
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 28.3 bits (60), Expect = 1.0
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 466 NCKNNLIKSTSINKQDKKVYLLEKSLRELPCSEDVYENDNTGLTTFTNINLNERP-TPVG 642
N KNN + ++ D K + ++S EL SE N N G+TT + + P TP+G
Sbjct: 98 NEKNN--EENNVVSSDSKEAITKESGAELESSEPASTNSNVGMTTRSG---RQSPRTPIG 152
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +1
Query: 472 KNNLIKSTSINKQDKKVYLLEKSLRELPCS--EDVYENDNTGLTTFTNINLNE 624
KN + + +NK ++ + ++KSL ++ + E++++ D TG T+ +NLN+
Sbjct: 279 KNIIYDESDVNKTNQSSFFIDKSLVDIDFAFDENIFDGD-TG-TSKVVLNLND 329
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +1
Query: 136 NERQQNSEHPGFFSLNVFKEHVKPRLLQLFSVRDSQIRMLLLMHFSKYIHVFTHEELSQH 315
N + + + P ++ +K + ++ +S+ + L+ F+ IHVF+ EEL Q
Sbjct: 2328 NSIRSSDDSPFLEIFRRMRKTLKKQTIEEYSIN----KKYLMQWFASVIHVFSGEEL-QP 2382
Query: 316 ILPELLLGI 342
+L E++ +
Sbjct: 2383 VLSEIIAAL 2391
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 151 NSEHPGFFSLNVFKEHVKPRLLQLFSVRDSQIRMLLLM 264
NS+HPG + + KE+ + L Q RD + ++ L+
Sbjct: 694 NSKHPGSDDMLIDKEYTRNILFQFLEQRDRRPEIVNLL 731
>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 505 KQDKKVYLLEKSLRELPCSEDVYE 576
K + +Y+L+ L+ CSE+ YE
Sbjct: 25 KDEHSLYILDNYLKNANCSENTYE 48
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 481 LIKSTSINKQDKKVYLLEKSLRELPCSEDVYENDNTGL 594
L ++S D K+ +++S REL + +VY N+ T +
Sbjct: 625 LSHNSSAGNIDDKMKSIDESTRELEKNYEVYRNEMTAI 662
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 249 NVVIDAFFKVYSCLHTRGALATY 317
N +I + YS +H RG ATY
Sbjct: 631 NSIIRGYDNYYSFVHNRGRFATY 653
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,817
Number of Sequences: 5004
Number of extensions: 48599
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -