Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9j11
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262...    40   0.001
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370...    33   0.15 
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376...    30   1.4  

>01_05_0705 +
           24424457-24424948,24425520-24425624,24426097-24426207,
           24426675-24426857,24427066-24427192,24427336-24427397,
           24427638-24427724,24428703-24428789,24429210-24429323,
           24429507-24429635,24429834-24429896,24430333-24430494,
           24430611-24430729,24430786-24431794
          Length = 949

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +1

Query: 187 FKEHVKPRLLQLFSVRDSQIRMLLLMHFSKYIHVFTHEELSQHILPELLLGIKDTDDNLV 366
           F+    P L+ +F+    +  +LL+ H    IH  T E L  H+LP L+    DTD  L 
Sbjct: 423 FELSTLPALVPVFTSASGETLLLLVKHADLIIHKATQEHLISHVLPMLVRAYDDTDPRLQ 482

Query: 367 ASTL 378
              L
Sbjct: 483 EEVL 486


>09_02_0058 -
           3704138-3704257,3704355-3704421,3704502-3704641,
           3705332-3705424,3705927-3706109,3706491-3706595,
           3706738-3706818,3706905-3707046,3707207-3707286,
           3707456-3707568,3708051-3708297,3708659-3709051
          Length = 587

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +1

Query: 193 EHVKPRLLQLFSVRDSQIRMLLLMHFSKYIHVFTHEELSQHILPELLLGIKDTDDNLVAS 372
           +H+ P++L+  +      RM +L   S    V   E   Q +LP ++   KD   N+  +
Sbjct: 474 QHIIPQVLEKINNPHYLYRMTILQAISLLAPVMGAEITCQQLLPVVINSSKDRVPNIKFN 533

Query: 373 TLICLSVLVPILGAAAV 423
               L  L+PIL  + V
Sbjct: 534 VAKVLQALIPILDQSVV 550



 Score = 32.7 bits (71), Expect = 0.26
 Identities = 27/133 (20%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
 Frame = +1

Query: 190 KEHVKPRLLQLFSVRDSQIRMLLLMHFSKYIHVFTHEELSQHILPELLLGIKDTDDNLVA 369
           +E + P  ++L    ++++R+      +K+  + + +   QHILP +     D+  ++ +
Sbjct: 278 REQLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPQLAIQHILPCVKELSSDSSQHVRS 337

Query: 370 STLICLSVLVPILGAAAVVGGKRSKYFT---DGRPNCKNNLIKSTSINKQDKKVYLLEKS 540
           +    +  + P+LG  A +      + +   D  P+ + N+I       Q   + LL +S
Sbjct: 338 ALASVIMGMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397

Query: 541 LRELPCSEDVYEN 579
           L  LP   ++ E+
Sbjct: 398 L--LPAIVELAED 408



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 3/134 (2%)
 Frame = +1

Query: 217 QLFSVRDSQIRMLLLMHFSKYIHVFTHEELSQHILPELLLGIKDTDDNLVASTLICLSVL 396
           ++FS+RD+    L      +    F  E   QHI+P++L  I +       + L  +S+L
Sbjct: 448 KVFSIRDAAANNL-----KRLAEEFGPEWAMQHIIPQVLEKINNPHYLYRMTILQAISLL 502

Query: 397 VPILGAAAVVGGKRSKYFTDGR---PNCKNNLIKSTSINKQDKKVYLLEKSLRELPCSED 567
            P++GA               +   PN K N+ K            ++EK+++  PC  +
Sbjct: 503 APVMGAEITCQQLLPVVINSSKDRVPNIKFNVAKVLQALIPILDQSVVEKNVK--PCLVE 560

Query: 568 VYENDNTGLTTFTN 609
           + E+ +  +  + N
Sbjct: 561 LSEDPDVDVRYYAN 574


>07_01_0505 -
           3759254-3759490,3759846-3759989,3760135-3760347,
           3760439-3760990,3761339-3761806,3761959-3762023,
           3762133-3762265,3763798-3764022
          Length = 678

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +1

Query: 133 CNERQQNSEHPGFFSLNVFKEHV-KPRLLQLFSVRDSQIRMLLLMHFSKYIHVFTHEELS 309
           C +  +    PG   L +FK+HV K  LL  F   D++ +M   M   K      H++L 
Sbjct: 547 CRDTHEVKLEPGLQVLKIFKDHVCKTSLLDDFDFYDNREKM---MQERK----AKHQQLK 599

Query: 310 QHILPELLLGIKDTDDNLV 366
           + ++ E LL   DT+++L+
Sbjct: 600 K-VVDEKLLNAVDTENSLL 617


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,145,942
Number of Sequences: 37544
Number of extensions: 274259
Number of successful extensions: 652
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)