Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9j11
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    31   0.95 
U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily ass...    29   2.9  
U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily ass...    29   2.9  
AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical p...    28   5.1  
Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
 Frame = -2

Query: 212 SLGFTCSLNTFKLKKPGCSLFCCLSLQGSRIYGMTSLRAVASNI------VSLESNN-PL 54
           ++GF C +    L    C    C    GS   G+       SN+      V L++NN P+
Sbjct: 315 NIGFQCQITQQCLGNSQCQNSFCQCTSGSPNNGICPTSPNTSNLCSSGQTVQLDNNNQPI 374

Query: 53  NCLATV 36
           NCL TV
Sbjct: 375 NCLVTV 380


>U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform b protein.
          Length = 592

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +1

Query: 292 THEELSQHILPELLLGIKDTDDNLVASTLICLSVLVPILGAAAVVGGKRSKYFTD 456
           ++  LS+++  +L LGI D    L    LI L++   IL   +VV  KR + FT+
Sbjct: 81  SNSPLSEYLPVKLCLGIHDVFIALFLVMLILLTIFGNILVVLSVVVYKRMRTFTN 135


>U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform a protein.
          Length = 564

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +1

Query: 292 THEELSQHILPELLLGIKDTDDNLVASTLICLSVLVPILGAAAVVGGKRSKYFTD 456
           ++  LS+++  +L LGI D    L    LI L++   IL   +VV  KR + FT+
Sbjct: 53  SNSPLSEYLPVKLCLGIHDVFIALFLVMLILLTIFGNILVVLSVVVYKRMRTFTN 107


>AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical
           protein B0524.3 protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = -2

Query: 566 SSEQGNSLNDFSKRYTFLSCLLMLVDFIKLFLQFGLPSVKYFDLFPPTTAAAPSIGTKTL 387
           SSE    ++DF K+    S    LVD++ +F Q  LP++       P +  + +IG + L
Sbjct: 436 SSELQQKISDFRKQGGITST--RLVDYVPIFAQANLPNL-------PNSPCSANIGKRDL 486

Query: 386 RHI 378
           R++
Sbjct: 487 RNL 489


>Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical
           protein F49A5.7 protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 331 LLGIKDTDDNLVASTLICLSVLVPILGAAAVVGGKRSKYFTDGRPNCKNNLIKSTS 498
           L+ I   ++N    TL  +S  +P+    AVV      Y+ DG P   NN++  T+
Sbjct: 319 LVSINSANENRYVQTLYYVSGYIPL---GAVVPNYNVIYWMDGSPATYNNILYYTN 371


>Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 364 VASTLICLSVLVPILGAAAVVGGKRSK 444
           VA  +I L VL+ I+G   V+ GKR++
Sbjct: 499 VAIAVIVLMVLIMIIGCLCVISGKRAE 525


>Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 364 VASTLICLSVLVPILGAAAVVGGKRSK 444
           VA  +I L VL+ I+G   V+ GKR++
Sbjct: 499 VAIAVIVLMVLIMIIGCLCVISGKRAE 525


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,822,466
Number of Sequences: 27780
Number of extensions: 267183
Number of successful extensions: 765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)