Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9j11
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.64 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +1

Query: 142 RQQNSEHPGFFSLNVFKEHVKPRL----LQLFSVRDSQIRMLLLMHFSKYIHVFTHEEL 306
           RQ + E P F    V+ E++ PRL    +Q+  V + +    + +HF  ++  + ++ +
Sbjct: 27  RQASVEQPSFSVHQVYPENLIPRLAKKAIQVLGVTEKEFFDQMGVHFVGFVGQYGYDRV 85


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 463 PNCKNNLIKSTSINKQDKKVYLLEKSLRELPCSE 564
           PN K        +NKQ   + LL+K  + +P  E
Sbjct: 18  PNVKQRAADQDLLNKQQDVIQLLQKISQPIPNQE 51


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 162 MFTILLSLITRFEDIWNDFPPCSCI 88
           + T +L+L+T F  + +D PP + +
Sbjct: 235 LVTSMLTLVTMFTGLKSDIPPVAYV 259


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 501 DAC*FYQVVFTVWSSVSKIF 442
           D C FY   F ++SS+S  +
Sbjct: 334 DQCLFYNTDFIIYSSLSSFY 353


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 358 NLVASTLICLSVLVPILGA 414
           NLVA TL  +S  +P+LG+
Sbjct: 241 NLVAETLPQVSDAIPLLGS 259


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 358 NLVASTLICLSVLVPILGA 414
           NLVA TL  +S  +P+LG+
Sbjct: 241 NLVAETLPQVSDAIPLLGS 259


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 358 NLVASTLICLSVLVPILGA 414
           NLVA TL  +S  +P+LG+
Sbjct: 241 NLVAETLPQVSDAIPLLGS 259


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 358 NLVASTLICLSVLVPILGA 414
           NLVA TL  +S  +P+LG+
Sbjct: 309 NLVAETLPQVSDAIPLLGS 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,985
Number of Sequences: 438
Number of extensions: 3457
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)