Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9j08
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 233 1e-62
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 157 1e-39
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 134 1e-32
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 31 0.20
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.46
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 28 1.1
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 28 1.4
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 27 2.4
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 27 2.4
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 26 5.6
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 25 7.5
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 7.5
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 7.5
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.5
SPAC4G8.15c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.5
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.5
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 25 7.5
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 25 7.5
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 7.5
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 9.9
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 233 bits (571), Expect = 1e-62
Identities = 121/206 (58%), Positives = 150/206 (72%), Gaps = 21/206 (10%)
Frame = +3
Query: 114 LIPIVNKLQDAFVQMGVHMSLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 293
LI +VN+LQ+AF +GV +DLPQI VV QS+GKSSVLEN VGRDFLPRG+GIVTRRP
Sbjct: 5 LIKVVNQLQEAFSTVGVQNLIDLPQITVVRSQSSGKSSVLENIVGRDFLPRGTGIVTRRP 64
Query: 294 LILQLIN---------------------GNTEYAEFLHCKGKKFTDFNEVRGEIEAETDR 410
L+LQLIN ++E+ EFLH G+KF +F ++R EI ET+
Sbjct: 65 LVLQLINRPSASGKNEETTTDSDGKDQNNSSEWGEFLHLPGQKFFEFEKIREEIVRETEE 124
Query: 411 VTGSNKGISPVPINLRVYSPNVLNLTLIDLPGLTKVPIGDQPIDIEQQIKGMIFQFIRRE 590
TG N GIS VPI LR+YSP+VL LTL+DLPGLTKVP+GDQP DIE+QI+ M+ ++I +
Sbjct: 125 KTGKNVGISSVPIYLRIYSPHVLTLTLVDLPGLTKVPVGDQPRDIEKQIREMVLKYISKN 184
Query: 591 SCLILAVTPANTDLANSDALKLAKEV 668
+ +ILAV ANTDLANSD LKLA+EV
Sbjct: 185 NAIILAVNAANTDLANSDGLKLAREV 210
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 157 bits (381), Expect = 1e-39
Identities = 72/115 (62%), Positives = 91/115 (79%)
Frame = +3
Query: 324 EYAEFLHCKGKKFTDFNEVRGEIEAETDRVTGSNKGISPVPINLRVYSPNVLNLTLIDLP 503
+YAEFLH KFTD N+VR EIE ET RV G+NKGI+ +PINL++YS VLNLTLIDLP
Sbjct: 113 DYAEFLHIPDTKFTDMNKVRAEIENETLRVAGANKGINKLPINLKIYSTRVLNLTLIDLP 172
Query: 504 GLTKVPIGDQPIDIEQQIKGMIFQFIRRESCLILAVTPANTDLANSDALKLAKEV 668
GLTK+P+GDQP DIE Q + +I ++I R + +ILAV+PAN D+ NS+ LKLA+ V
Sbjct: 173 GLTKIPVGDQPTDIEAQTRSLIMEYISRPNSIILAVSPANFDIVNSEGLKLARSV 227
Score = 99 bits (238), Expect = 3e-22
Identities = 50/70 (71%), Positives = 55/70 (78%)
Frame = +3
Query: 105 MQQLIPIVNKLQDAFVQMGVHMSLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 284
M+QLIP+VN+LQD LDLP I VVG QS GKSSVLEN VG+DFLPRG+GIVT
Sbjct: 1 MEQLIPLVNQLQDLVYNTIGSDFLDLPSIVVVGSQSCGKSSVLENIVGKDFLPRGTGIVT 60
Query: 285 RRPLILQLIN 314
RRPLILQLIN
Sbjct: 61 RRPLILQLIN 70
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 134 bits (324), Expect = 1e-32
Identities = 78/190 (41%), Positives = 121/190 (63%), Gaps = 3/190 (1%)
Frame = +3
Query: 108 QQLIPIVNKLQDAFVQMGVHMSLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 287
+++I I N LQD +Q + ++ LP I V+G QS+GKSSVLE VG +FLP+GS +VTR
Sbjct: 242 KKMIEIRNILQD--IQDN-NSAVTLPSIVVIGSQSSGKSSVLEAIVGHEFLPKGSNMVTR 298
Query: 288 RPLILQLING---NTEYAEFLHCKGKKFTDFNEVRGEIEAETDRVTGSNKGISPVPINLR 458
RP+ L L++ Y EF + K TDF++++ I + + S++G+ PI L
Sbjct: 299 RPIELTLVHSADTAIPYGEFSGVQLGKITDFSKIQ-HILTDLNMAVPSSQGVDDNPIRLT 357
Query: 459 VYSPNVLNLTLIDLPGLTKVPIGDQPIDIEQQIKGMIFQFIRRESCLILAVTPANTDLAN 638
+Y+ ++ NL+LIDLPG ++ DQP D++ +I + ++I RE +ILAV A+ DLAN
Sbjct: 358 IYASHIPNLSLIDLPGYIQIHSEDQPADLDMKISKLCEKYI-REPNIILAVCAADVDLAN 416
Query: 639 SDALKLAKEV 668
S AL+ ++ V
Sbjct: 417 SAALRASRRV 426
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 30.7 bits (66), Expect = 0.20
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 519 PIGDQPIDIEQQIKGMIFQFIRRESCLILAVTPANTDLANSDAL 650
P G Q K ++F I+ ES L L ++PA+T+++N+ ++
Sbjct: 154 PTGSFHTVTSNQEKDLLFSHIKHESDLPLGLSPADTNISNATSI 197
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 0.46
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -1
Query: 584 SDELEYHPFDLLLDIYRLITDWHFCQTRQINQRQVEHIRGINTQVNRYRRY 432
SD +HP D +L + I W T++++ + EH+R +NT +N RY
Sbjct: 1294 SDPTVFHPDDKILSV---ILPWLMEGTKKMDFLK-EHLRTMNTTLNNAMRY 1340
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +3
Query: 165 HMSLDLP---QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 293
H+ +D+ +I VVG AGKS++L+ + + L SGIV+R P
Sbjct: 536 HVDIDVQMDSRIGVVGPNGAGKSTMLKLLI--EQLHPTSGIVSRHP 579
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 393 EAETDRVTGSNKGISPVPI--NLRVYSPNVLNLTLIDLPGLTKVP 521
+AETD + S K S +P+ N+ + PN L + I+LP P
Sbjct: 1349 KAETDSLAASYKEESALPVASNVGLRQPNELRIDSINLPPAIVTP 1393
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 267 LLVKNPSRQNSLKQNSFL-PTDHPQQRFVEDLRTCARPFVQMHL 139
LL +NP Q L++ ++ + HP +V+ + PF+Q+ L
Sbjct: 288 LLYQNPLTQRMLERILYVWASRHPASGYVQGISDLVTPFIQVFL 331
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 594 CLILAVTPANTDLANSDALKLAKE 665
CL +TP+ T + NSD+L L K+
Sbjct: 203 CLHCPLTPSTTHIVNSDSLALMKK 226
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 394 SISPRTSLKSVNFFPLQCKNSAYSVFPFISCRINGRRVTMPEPLGKKS 251
S S +S S+N+ P K S SV IS NG+ + K+S
Sbjct: 6 SFSSTSSASSINWIPKNTKTSIESVSNTISLSENGQNQDLETVTTKES 53
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 186 QIAVVGGQSAGKSSVLENFVGRDFL 260
+IAV+G +S GKSS+ +V F+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFV 32
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 198 VGGQSAGKSSVLENFVGRDF 257
VG S GKSSVL+N + R F
Sbjct: 616 VGTTSVGKSSVLDNILKRIF 635
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Frame = +3
Query: 510 TKVPIGDQPIDIEQQIKGMI--------FQFIRRESCLILAVTPANTDLANSDALK 653
T +P+ + +DI+Q++K + FI + + LI + NTD+A K
Sbjct: 1360 TLIPLVNSDVDIQQEVKQQLEEWRKHGDLPFINKFTRLIFELLSGNTDIAEGCGTK 1415
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 588 ESCLILAVTPANTDLANSDALKL 656
E C +L + +NTD+ NS +L L
Sbjct: 232 EKCTVLLLKRSNTDVDNSSSLSL 254
>SPAC4G8.15c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 46
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 539 YRLITDWHFCQTRQINQRQVEHIRGINTQVNRYRRYTLVGTSNTI 405
Y + H Q N+R++ HI + T+ +RY + ++ + NTI
Sbjct: 3 YEIFIMQHLLIKSQSNERKITHIFHMLTKFDRYSK-MILNSINTI 46
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -2
Query: 427 LLEPVTRSVSASISPRTSLKSVNFFPLQCKNS---AYSVFPFISCRINGRRVT 278
L V ++S +IS KS+ FF CK + +VF I +N R+V+
Sbjct: 52 LQSDVNSNISRNISNTFFKKSIFFFVYYCKQALEFISTVFSIIKFLLNRRKVS 104
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 496 SISVRLSTFGE*TRRLIGTGDIPLLEPVTRSVSASISPRTSLKSVNFF 353
SI + FG+ ++ G +LEP+ + A I+ L +NFF
Sbjct: 68 SIETAIKKFGKLDSVILNAG---VLEPIAKIADADINEWRKLFDINFF 112
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -1
Query: 542 IYRLITDWHFCQTRQINQRQVEHIRGINTQVNRYRRYTLVGTSNTICL 399
++R+ H+C T+ Q + + ++ +TLVG TICL
Sbjct: 164 VHRICNLLHWCNTKTEEQTRAALQSWLPKELWFELNHTLVGFGQTICL 211
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.4 bits (53), Expect = 7.5
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = -2
Query: 145 ASCNLFTIGINCCIPKF 95
++CNL+ + I+C +PK+
Sbjct: 969 SNCNLYKVAIDCELPKY 985
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -3
Query: 144 HLVICLR*ESTAAFQNFQPFLI*YINIQSPNTRFPLAHHQF 22
+ V+C++ E + Q + L+ ++ + NT +AHH+F
Sbjct: 714 YFVLCMQLEESIGTQEQR--LLSFLRVYEKNTLSEIAHHKF 752
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,423
Number of Sequences: 5004
Number of extensions: 59447
Number of successful extensions: 181
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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