Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9j08
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.86 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.0  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 314 WKYRICRILTLQGKEVH 364
           W ++ C  +++ GKEVH
Sbjct: 116 WDFQECTFISVNGKEVH 132


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 629 IRVGRSNCQDKA*FASDELEY 567
           + +G+  C D   + SDEL Y
Sbjct: 195 VDLGKGGCNDAFAYMSDELGY 215


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 117 IPIVNKLQDAFVQMGVHMSLDLPQIAVV 200
           +PI+N L +  V + V  +   PQ+ +V
Sbjct: 252 VPIINTLLERSVDLVVTSTYCEPQVVIV 279


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 183 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINGNTEY 329
           P++  + G+SAG SSV  + +     P   G+V R  L    +N    Y
Sbjct: 244 PELITIFGESAGGSSVSLHLIS----PVTRGLVRRGILQSGTLNAPWSY 288


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 183 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINGNTEY 329
           P++  + G+SAG SSV  + +     P   G+V R  L    +N    Y
Sbjct: 244 PELITIFGESAGGSSVSLHLIS----PVTRGLVRRGILQSGTLNAPWSY 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,044
Number of Sequences: 438
Number of extensions: 4248
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)