Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9j06
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0966 - 23016581-23016772,23017242-23017427,23017537-230176...    30   1.5  
12_01_1009 - 10253409-10255033,10255301-10255610,10255707-102563...    28   6.1  

>07_03_0966 -
           23016581-23016772,23017242-23017427,23017537-23017653,
           23017930-23018084,23018785-23019039,23019226-23019304,
           23019503-23019714,23020644-23020698
          Length = 416

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 294 DLKSKHKFESQIITRTKTPLQTSNVKTFYIGT*M*KPCFTIYK 166
           DL+ KH+F+ + +T T  PL+T  +    IG  +   C  + K
Sbjct: 19  DLREKHQFDLERLTLTSQPLRTLALFALAIGQSIKSTCLCVLK 61


>12_01_1009 -
           10253409-10255033,10255301-10255610,10255707-10256312,
           10256359-10256487
          Length = 889

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 51  RTTLKETTIHYKFHL--E*SAPIYCKNLCFSILFSECTTT 164
           RT + E  +H   HL    S PI CK L   ++ S  TTT
Sbjct: 466 RTIVSEDIVHSLLHLISNTSPPIQCKLLEIFVMLSSSTTT 505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,743,809
Number of Sequences: 37544
Number of extensions: 254296
Number of successful extensions: 373
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)