Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9i24
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27... 56 3e-09
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.35
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 29 0.62
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 1.9
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 26 3.3
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.4
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 7.6
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 25 7.6
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 7.6
>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 153
Score = 56.4 bits (130), Expect = 3e-09
Identities = 31/102 (30%), Positives = 52/102 (50%)
Frame = +1
Query: 70 INNCIIVNIYRLKMSFNILLKTSERGIFLKELVRNASKKTGGSTQNTNCKVKPKHRGWKV 249
IN + + + ++ L I +R ++K GGS++NT + G K
Sbjct: 2 INQGLFIRVNNFQLLKASLAYKKASNILTFPPIRTSTKHGGGSSKNTGDSAG-RRLGIKR 60
Query: 250 QDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEAGKV 375
+ FV+AG +L QR T+FHPG N G G + T++++ +G V
Sbjct: 61 SENQFVRAGEILIRQRGTKFHPGDNTGLGKDHTIYSLVSGYV 102
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 29.5 bits (63), Expect = 0.35
Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 18/144 (12%)
Frame = +1
Query: 88 VNIYRLK-MSFNILLK---TSERGIFLKELVRNASKKTGGSTQNTNCK--------VKPK 231
V Y L +S+N+ ++ ++ F KE + N S G N + VK K
Sbjct: 433 VTYYNLNTLSWNLYIEYGHPTQNSTFYKEFISNISMSDDGRIYFMNTRDIKVRSLVVKLK 492
Query: 232 HRGWKVQDG---HFVQ-AGHMLATQRT--TRFHPGLNVGFGVNGTLFAMEAGKVVVTCEK 393
H+ W + G H + H + + T F PGL + V + G
Sbjct: 493 HKYWHLSSGFHLHITRFEAHDMGKVKDIDTDFEPGLQC-YQVGSDTSVLRYG-----LSF 546
Query: 394 FDPNWDHTWVQRMYKGRYDQTIYK 465
+DP WD+ +K ++ YK
Sbjct: 547 WDPKWDYLLADNQHKQQWQAPSYK 570
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 28.7 bits (61), Expect = 0.62
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 399 IKLFTCDNYF-SSLHCKQSTINTKTNIQSWMKPSGSLRS 286
+ LF + F SS+ K +I TKT I SW K G+ S
Sbjct: 649 LHLFQAQSDFESSVELKDRSIVTKTTIMSWSKYQGTKES 687
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 1.9
Identities = 18/83 (21%), Positives = 35/83 (42%)
Frame = +1
Query: 106 KMSFNILLKTSERGIFLKELVRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHML 285
K++ N ++ + F +EL+ + K + + + R WK ++A +
Sbjct: 188 KITLNSVVNSISYSSFFEELLITSYAKPKEALRTRGLAIVWNQR-WKNSPESVLKARSEI 246
Query: 286 ATQRTTRFHPGLNVGFGVNGTLF 354
+ + FHP L G NG +F
Sbjct: 247 TVCKPSPFHPQLIAGGAYNGQVF 269
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 40 NLKDSINHKYINNCIIVNIYRLKMSFNILLKTSERGIFLKELVRN 174
+++ + NH + C + + R SF I L S+ F+KE +RN
Sbjct: 506 DVEKAFNHLQV--CNLPELLRTSNSFGIWLFNSDPMRFMKEAIRN 548
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Frame = -2
Query: 486 WYNIVIFFIDG---LVIAPFVHPLDPSVIP-----VWIKLFTCDNY-FSSLH 358
W+ FF IA F+HP D +V+P + LF+ ++ F+SLH
Sbjct: 77 WFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLH 128
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 210 SILRTTSGFFTGIPDKLF*KNTSF*CFE*N 121
S++ TTS F +PD +F K + FE N
Sbjct: 1553 SMVGTTSSFLDKVPDGIFLKTSRLPIFEAN 1582
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 426 LDPSVIPVWIKLFTCDNYFSSLHCKQSTINTKTNIQSWMKPSGSLRS 286
L P + + K +T + LH + INT+ + Q+ +K G+ S
Sbjct: 469 LTPIIFVINNKGYTIERLIHGLHAVYNDINTEWDYQNLLKGYGAKNS 515
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 7.6
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 513 KFKSLMLGLWYNIVIFFIDGLVIAPFVHPLDPSVIPVWIKLFTCDN-YFSSL 361
+ +LG +Y FF+ ++ PFV S+ W TC N FSSL
Sbjct: 1296 RLSKYILGTFYKEQFFFLMQAIMQPFVGYTGQSLYESW--GLTCFNTLFSSL 1345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,468
Number of Sequences: 5004
Number of extensions: 48799
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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