Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9i24
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0356 + 14847677-14847755,14847850-14847971,14848197-14848433 60 2e-09
08_02_0609 + 19302665-19302743,19302857-19302978,19303205-19303441 59 3e-09
08_02_0608 + 19297510-19297588,19297702-19297823,19298050-19298286 59 3e-09
01_07_0012 + 40446271-40446609,40447378-40447479,40447565-40447741 37 0.013
11_01_0534 + 4227838-4228001,4229034-4229151,4229593-4229752,422... 29 3.4
07_03_0912 + 22544144-22545589 28 5.9
06_01_0368 + 2645007-2645317,2645422-2645509,2648927-2649183,264... 28 5.9
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 27 7.7
>04_03_0356 + 14847677-14847755,14847850-14847971,14848197-14848433
Length = 145
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = +1
Query: 91 NIYRLKMSFNILLKTSERGIFLKELVRN-ASKKTGGSTQNTNCKVKPKHRGWKVQDGHFV 267
N+ L + ++ T E L + + A+KKT GST+N PK+ G K G V
Sbjct: 11 NVKELISNVSVYTSTVESSGGLSLIFKRWATKKTAGSTKNGRDS-NPKYLGVKKFGGEKV 69
Query: 268 QAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEAGKV 375
+ G+++ QR TRFHPG VG G + TLF ++ G V
Sbjct: 70 EPGNIIVRQRGTRFHPGNYVGMGKDHTLFCLKEGHV 105
>08_02_0609 + 19302665-19302743,19302857-19302978,19303205-19303441
Length = 145
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = +1
Query: 169 RNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGT 348
R A+KKT GST+N PK+ G K G V+ G+++ QR TRFHPG VG G + T
Sbjct: 38 RWATKKTAGSTKNGRDS-NPKYLGVKKFGGEKVEPGNIIIRQRGTRFHPGNYVGMGKDHT 96
Query: 349 LFAMEAGKV 375
LF ++ G V
Sbjct: 97 LFCLKEGHV 105
>08_02_0608 + 19297510-19297588,19297702-19297823,19298050-19298286
Length = 145
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = +1
Query: 169 RNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGT 348
R A+KKT GST+N PK+ G K G V+ G+++ QR TRFHPG VG G + T
Sbjct: 38 RWATKKTAGSTKNGRDS-NPKYLGVKKFGGEKVEPGNIIIRQRGTRFHPGNYVGMGKDHT 96
Query: 349 LFAMEAGKV 375
LF ++ G V
Sbjct: 97 LFCLKEGHV 105
>01_07_0012 + 40446271-40446609,40447378-40447479,40447565-40447741
Length = 205
Score = 36.7 bits (81), Expect = 0.013
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Frame = +1
Query: 166 VRNASKKTGGSTQNTNCKVKPKHR-GWKVQDGHFVQAGHMLATQRTTRF----------H 312
++ A KK GST+N + P R G K+ + G ++ QR TR +
Sbjct: 58 IQMAHKKGAGSTKNG--RDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVITILFLYLLVY 115
Query: 313 PGLNVGFGVNGTLFAMEAGKVVVTCEKFDPNWDHTWVQRMYKGRYDQTIY----KKYYNV 480
PG NVG G + TLF++ G +V EK+ P+ V K + Y ++Y+ +
Sbjct: 116 PGNNVGMGKDHTLFSLIDG--LVKFEKYGPDKKKVSVYPYEKQPENPNSYRARKREYFRM 173
Query: 481 IPEPQHQRFKLIDEV*IVL 537
E + R + I EV +VL
Sbjct: 174 QRERKKARAEGIVEVQLVL 192
>11_01_0534 +
4227838-4228001,4229034-4229151,4229593-4229752,
4229901-4230027,4230899-4231037,4231119-4231301,
4231395-4231464,4231550-4231662
Length = 357
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 401 GSNFSHVTTTFPASIANKVPLTPKPTFNPG*NRVVLCVANICPA 270
GS+ + + P NKVP P + P N++V C +IC A
Sbjct: 77 GSDLTWLQCDAPCQSCNKVP---HPLYRPTKNKLVPCANSICTA 117
>07_03_0912 + 22544144-22545589
Length = 481
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -2
Query: 462 IDGLVIAPFVHPLDPSVIPVWIKLFTCDNY-FSSLHCKQSTINTKTNIQSWMKPSGSLRS 286
++G V P + P+ PS +PV + T NY + H ++ T + S ++ G++ +
Sbjct: 164 MEGTVDVPGLPPVPPSYMPVCLVSKTVKNYDWFEYHGRRFTEAKGIIVNSSVELEGAVLA 223
Query: 285 *HMSRLNKMPILYFPPSVLWFYFTI 211
P ++ V+WF T+
Sbjct: 224 AIADGRRPAPAIHAIGPVIWFDATL 248
>06_01_0368 +
2645007-2645317,2645422-2645509,2648927-2649183,
2649453-2649504,2649527-2649838
Length = 339
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 453 LVIAPFVHPLDPSV 412
L I PFVHP DPSV
Sbjct: 16 LAIVPFVHPKDPSV 29
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 295 RTTRFHPGLNVGFGVNGTLFAMEAGKVVVTCEKFDPNWDHTWVQRMYK 438
R R GL G V +L + +G+V+ E+FD +W WV+ +K
Sbjct: 3 RLRRGGVGLLRGAVVLASLLLVVSGEVIFE-ERFDDDWGSRWVKSDWK 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,149,207
Number of Sequences: 37544
Number of extensions: 291889
Number of successful extensions: 787
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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