Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9i23
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    27   2.0  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   4.7  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   6.2  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   8.2  

>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
 Frame = +3

Query: 255 SYLKVYNISKNLENMEILPVTNQF-NVGFNSEKAWSGPTWREAPAPVPTEAALAQRLERE 431
           SYL V  +SK       +P   +F     +S     G T      P P+ A ++  LE+ 
Sbjct: 246 SYLVVSAMSKVRRPTLTIPTPKKFVRAALSSIGLQRGGTNPYISQPYPSHAVMSWSLEQL 305

Query: 432 LRAAKG--ASELATAEVLVPAELLARASR 512
           L +AKG   S++A   + +    L + +R
Sbjct: 306 LGSAKGFVVSQVAAMHLSIRKRALRKEAR 334


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 488 GAAREGVAADPRASGGRALWVPGRSRHH 571
           G+ARE  A  PRA  GR +     +R H
Sbjct: 672 GSAREHAALQPRAMNGRIILTKSFARIH 699


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 535 PSASARVCRDALASSSAG 482
           P AS RVCRDA+   S G
Sbjct: 105 PVASIRVCRDAVTRRSLG 122


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 252  FSYLKVYNISKNLENMEILPVTNQF 326
            F +     +SK  +N+++LP+ N+F
Sbjct: 1128 FKFANANQVSKTKKNLKVLPLYNRF 1152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,228
Number of Sequences: 5004
Number of extensions: 36672
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)