Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9i23
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    29   1.9  
L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase prote...    28   4.3  
L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase prote...    28   4.3  
L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...    28   4.3  
AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical ...    27   7.5  
AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical...    27   7.5  

>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 422 RERTTSGQRSQRARHRGGLSAGGAAREG 505
           RER +S  RS RAR+ GG   GG    G
Sbjct: 35  RERESSRSRSPRARYGGGGGGGGGGGRG 62


>L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase protein
           2, isoform c protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 488 GAAREGVAADPRASGGRALWVPGRSRHH 571
           G++RE  A +PR  GGRA+ V   +R H
Sbjct: 568 GSSREHAALEPRHLGGRAIIVKSFARIH 595


>L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase protein
           2, isoform b protein.
          Length = 665

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 488 GAAREGVAADPRASGGRALWVPGRSRHH 571
           G++RE  A +PR  GGRA+ V   +R H
Sbjct: 550 GSSREHAALEPRHLGGRAIIVKSFARIH 577


>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein
           2, isoform a protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 488 GAAREGVAADPRASGGRALWVPGRSRHH 571
           G++RE  A +PR  GGRA+ V   +R H
Sbjct: 662 GSSREHAALEPRHLGGRAIIVKSFARIH 689


>AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.2 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +2

Query: 458 ARHRGGLSAGGAAREGVAADPRASGG 535
           A   GG  AGGA R    A PRA GG
Sbjct: 221 APRAGGSGAGGAPRPPPPAGPRAFGG 246


>AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical
           protein Y47D7A.13 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +3

Query: 312 VTNQFNVGFNSEKAWSGPTWREAPAPVPTEAALAQRLERELRAAKGASELATAEVL-VPA 488
           VT Q  VG   ++    P   +APAPV  +A  A   E+    A+  +   T E     A
Sbjct: 215 VTEQQQVGQGYQQQQQAPVQEQAPAPVQEQAPAASYGEQAPVQAQQETVQQTFEAAPAQA 274

Query: 489 ELLARASRQTLALAE 533
           +  A    Q  A+AE
Sbjct: 275 QPAAEYGAQQPAVAE 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,500,113
Number of Sequences: 27780
Number of extensions: 211195
Number of successful extensions: 631
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)