Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9i15
         (255 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   2.1  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   3.7  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    23   4.9  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    23   4.9  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    23   6.4  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    23   8.5  

>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 101 GFIFNISIVWLEAERRR 51
           GF+  IS +W+ A RR+
Sbjct: 795 GFVLGISRIWVSASRRK 811


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 100  VLYLTYPLFGWKPSEEDALF 41
            V Y+TY LFG K   ++ +F
Sbjct: 1397 VFYVTYSLFGMKELNDNNIF 1416


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 100 VLYLTYPLFGWKPSEEDAL 44
           +LYL  P  GWKP    AL
Sbjct: 154 ILYLVEPDEGWKPEYGGAL 172


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 112 PHLTVLYLTYPLF 74
           P+LTV+Y T PLF
Sbjct: 198 PYLTVMYSTGPLF 210


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 31  TNSEKGHLLRSASSQTMDMLNIKPLSE 111
           T+S KGH   S S++   MLN   L E
Sbjct: 162 TSSLKGHAFASPSNRFWKMLNKSKLLE 188


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 95  IFNISIVWLEAERRRCPFSEF 33
           +FN+ +VW   E+R   F  F
Sbjct: 90  LFNVFLVWSRLEKRAALFPYF 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.303    0.116    0.319 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,271
Number of Sequences: 5004
Number of extensions: 8019
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)