Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9i15
         (255 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1140 + 31177017-31177204,31177574-31177643,31177717-311778...    25   6.4  
08_02_1139 - 24638824-24639325,24639528-24639713,24639801-246405...    25   8.4  
02_03_0333 + 17843605-17843661,17843713-17843881,17845606-178457...    25   8.4  

>04_04_1140 +
           31177017-31177204,31177574-31177643,31177717-31177878,
           31177976-31178020,31178119-31178163,31178377-31178471,
           31179122-31179149
          Length = 210

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 4   QLHSRXKQTTNSEKGHLLRSASSQTMDMLNIKPLSEDIK 120
           ++HSR  Q    +  +L    S Q    L +KPL  +++
Sbjct: 151 EMHSREMQIPGDQSNYLCHMLSPQLEYKLKLKPLQPNLQ 189


>08_02_1139 -
           24638824-24639325,24639528-24639713,24639801-24640543,
           24640709-24640870,24641141-24641500
          Length = 650

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 27  NNELRKRASSSLGFQPNNGYVKYKTVK 107
           ++ +  RA  SLGF  N+ YV++K  K
Sbjct: 397 DDRVTHRAPLSLGFDANDDYVEHKRRK 423


>02_03_0333 +
           17843605-17843661,17843713-17843881,17845606-17845723,
           17845725-17846358,17846457-17846526,17847680-17847804,
           17848146-17848270,17848638-17848730,17849714-17849753
          Length = 476

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 7   LHSRXKQTTNSEKGHLLRSASSQTMDMLNIKPLSE 111
           LH   +     +  H ++  S +T+++L+I+P S+
Sbjct: 199 LHESPESILQQDDLHFIQKDSGETLELLSIEPPSQ 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.303    0.116    0.319 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,149,135
Number of Sequences: 37544
Number of extensions: 50369
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)