Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9i15
         (255 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72505-3|CAA96610.1|  340|Caenorhabditis elegans Hypothetical pr...    28   0.80 
U50301-11|AAB37048.1|  269|Caenorhabditis elegans Hypothetical p...    28   0.80 
AF077529-5|AAN60534.1|  756|Caenorhabditis elegans Hypothetical ...    26   4.3  
AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical ...    26   4.3  
Z72515-5|CAH60771.2|  331|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical p...    25   9.8  

>Z72505-3|CAA96610.1|  340|Caenorhabditis elegans Hypothetical
           protein C50C10.4 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 127 ETTLCPHLTVLYLTYPLFGWKPSEEDALFRSSLFV 23
           ET + P   VLYLT+P+FG K  +      SS+FV
Sbjct: 296 ETVMMPW--VLYLTHPMFGPKKQQLKPSGASSVFV 328


>U50301-11|AAB37048.1|  269|Caenorhabditis elegans Hypothetical
           protein F20D6.1 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 27  NNELRKRASSSLGFQPNNGYVKYKTV 104
           N  +RK+ SS    +PN GY+ YK V
Sbjct: 56  NAAIRKKGSSDKSVKPNVGYMYYKLV 81


>AF077529-5|AAN60534.1|  756|Caenorhabditis elegans Hypothetical
           protein C09E8.1b protein.
          Length = 756

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 121 TLCPHLTVLYLTYPLFGWKPSEEDALFRSSL 29
           T    LTV  L + ++GW+  E+D +  S +
Sbjct: 437 TALVQLTVFILIFFVYGWQKLEQDVMMTSQI 467


>AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical
           protein C09E8.1a protein.
          Length = 783

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 121 TLCPHLTVLYLTYPLFGWKPSEEDALFRSSL 29
           T    LTV  L + ++GW+  E+D +  S +
Sbjct: 437 TALVQLTVFILIFFVYGWQKLEQDVMMTSQI 467


>Z72515-5|CAH60771.2|  331|Caenorhabditis elegans Hypothetical
           protein T11A5.7 protein.
          Length = 331

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 127 ETTLCPHLTVLYLTYPLFGW 68
           +T++  +LT+  + +PLFGW
Sbjct: 18  KTSMAFNLTIALIGFPLFGW 37


>Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical
           protein F56H6.12 protein.
          Length = 668

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 78  CLAGSRAKKMPFFGVRCLFXSR 13
           C+   RA+  PFF V C F +R
Sbjct: 47  CMLLKRAETKPFFTVVCTFYTR 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.303    0.116    0.319 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,543,597
Number of Sequences: 27780
Number of extensions: 44812
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)