Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9i15
         (255 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   0.44 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   5.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    19   9.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    19   9.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    19   9.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 0.44
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 31  TNSEKGHLLRSASSQTMDMLNI-KPLS 108
           TN++  HL R+ASS   D+ ++ +PL+
Sbjct: 266 TNTDARHLFRTASSTPEDLQDLEEPLT 292


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 122 HFMSSLNGFIFNISIVWLEAERRRCPFSEFV 30
           H+ S L   I +I   WL A     PF+ +V
Sbjct: 142 HYRSGLKRAIRSIFGAWLIALIFAMPFATYV 172


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 110 SLNGFIFNISIVWL 69
           S+NG +  I  +WL
Sbjct: 164 SINGALIRIIAIWL 177


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 110 SLNGFIFNISIVWL 69
           S+NG +  I  +WL
Sbjct: 130 SINGALIRIIAIWL 143


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 110 SLNGFIFNISIVWL 69
           S+NG +  I  +WL
Sbjct: 40  SINGALIRIIAIWL 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.303    0.116    0.319 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,238
Number of Sequences: 438
Number of extensions: 505
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4511484
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.3 bits)