Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9i04
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 307 5e-84
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 30 1.9
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 29 2.5
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 3.3
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 3.3
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 5.8
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 307 bits (754), Expect = 5e-84
Identities = 143/215 (66%), Positives = 168/215 (78%)
Frame = +2
Query: 35 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 214
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 215 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 394
KI+ QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +K
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121
Query: 395 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 574
LCKVK V T K VP L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181
Query: 575 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHT 679
+TGGRN+GRVG I RER PG+ DI+HIKDS GH+
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHS 216
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 630 IPAPSTLCTSRTPRDTPFATRLNNVFIIGK 719
+P S + + FATR++NVF+IGK
Sbjct: 200 LPGASDIIHIKDSAGHSFATRISNVFVIGK 229
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +2
Query: 347 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 478
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Frame = +1
Query: 463 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRL 639
HH + + + H P H ++ ++G H HG HH P
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHG-------HHGE-------HHHAPAHHGHH 542
Query: 640 LRHCAHQGLHGTHPSP 687
H H G HG+H SP
Sbjct: 543 GEHGTHHGHHGSHHSP 558
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 607 HHRVPRETSRLLRHCAHQGLHGTHPSP 687
HH P H H G HG+H SP
Sbjct: 474 HHHAPAHHGHHGEHGTHHGHHGSHHSP 500
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 577 HGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTH 678
HG G+ G H T L H H G HGTH
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH 676
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -1
Query: 705 TRCSTSWRRVCPVESLMCTMSKE--PGC 628
T C+ W R+C +E CT+ +E P C
Sbjct: 1811 TACTDEWSRLCELEKKQCTVDEEEVPQC 1838
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 565 LVYDHGRP*LGARGHHRVPRETSRLLRH 648
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 565 LVYDHGRP*LGARGHHRVPRETSRLLRH 648
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -1
Query: 504 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 340
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,428,454
Number of Sequences: 27780
Number of extensions: 416085
Number of successful extensions: 1168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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