Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9i02
         (129 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical...    26   3.2  
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct...    26   3.2  
U97012-7|AAK39139.2|  387|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
           protein Y51A2D.19a protein.
          Length = 1140

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 78  DTHLNTDSLKIFEYKVKR 25
           DTHLNT SL+ F Y++K+
Sbjct: 717 DTHLNTKSLR-FAYEIKK 733


>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans
           large-conductance calcium-activatedpotassium channel
           SLO-1a protein.
          Length = 1140

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 78  DTHLNTDSLKIFEYKVKR 25
           DTHLNT SL+ F Y++K+
Sbjct: 717 DTHLNTKSLR-FAYEIKK 733


>U97012-7|AAK39139.2|  387|Caenorhabditis elegans Hypothetical
           protein C04E6.4 protein.
          Length = 387

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 119 TKSKNFIKIKLKFE 78
           +KSKNFI+IK+ F+
Sbjct: 20  SKSKNFIEIKISFD 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,841
Number of Sequences: 27780
Number of extensions: 23006
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 12,740,198
effective HSP length: 23
effective length of database: 12,101,258
effective search space used: 229923902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)