Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9h19
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    27   0.72 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   2.9  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   2.9  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    24   5.1  
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc...    24   6.7  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    24   6.7  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    24   6.7  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    23   8.8  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    23   8.8  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    23   8.8  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    23   8.8  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    23   8.8  

>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 0.72
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -2

Query: 307 SHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNST 128
           S+D I  L+     F   H+E   +    +Y   L      E+  +N  GYYD   D S 
Sbjct: 568 SYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGKDESY 627

Query: 127 L 125
           L
Sbjct: 628 L 628


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 101  WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFH 6
            W +LLV  +  C NS   +R+G  Q   +IF+
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN 1055


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -3

Query: 225 PSDTLPP*TVVPHPSRSTKIPWGITTPCWIIAPCWM 118
           PSD     T VP  + S   PW  TTP     P W+
Sbjct: 21  PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -2

Query: 322  AEFVISHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSE 182
            AE++IS    +   +  A+  +GH + +L  + + +T A  G +P +
Sbjct: 1392 AEYLISETHRLINDILDALEVIGHEQTDLNHIFINFTPAF-GLAPKQ 1437


>SPAC926.05c |||diphthamide biosynthesis protein Dph4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 133 YYPTRCRNTPGYFC*SARMGNYRSRRQCI 219
           YYP RC +  GY      + N RS   C+
Sbjct: 94  YYPCRCGDLGGYVVTEDDLENNRSVVPCM 122


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 121 DVWAEVDGMCYSYDAHILVVILLREF-GMVNSKVNIR 14
           DVW E+D +  S  +  + ++ L  F  + N K+N +
Sbjct: 414 DVWREIDTLANSETSSAIQMVALTAFHKLQNEKLNTK 450


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 316 FVISHDAIMTLVLFPAVFFV 257
           ++++H  I+TL+  P VF +
Sbjct: 67  YLVTHKVILTLIAVPVVFAI 86


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 227 NLHKLELIVTNKENCREQYK 286
           N H LELI T + N  E+Y+
Sbjct: 272 NRHMLELINTTETNIYERYR 291


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -2

Query: 157 YYDTLLDNSTLLDVWAEVDGMCYSYDAHILVVILLRE 47
           Y+    D   LL +W  +     SYD HI V   + E
Sbjct: 612 YFKREFDWEVLLKLWDVLFTNYLSYDYHIFVAYAIAE 648


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 217 YTAALNGSSPSEQINKNTLGYYDTLLDNSTLL 122
           YT     S+ + + N +T+G+  +  DN+T+L
Sbjct: 139 YTCFDYSSTTARRTNSSTIGFLASYGDNTTVL 170


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 6   VKYLMFTLLLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRV 131
           V YL+ T+  T+P +L  I   M A+ +   PS  A  + R+
Sbjct: 294 VHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRI 335


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 3/16 (18%)
 Frame = -1

Query: 293  HDPCT---VPCSFLCW 255
            HD  T   VPC+F CW
Sbjct: 1156 HDKLTSKKVPCTFCCW 1171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,634
Number of Sequences: 5004
Number of extensions: 28750
Number of successful extensions: 96
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)