Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9h19
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 29 0.86
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 28 2.0
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288... 28 2.0
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 28 2.0
12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179 27 2.6
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957 27 3.5
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 27 3.5
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508... 27 3.5
06_01_1013 - 7931756-7935109 27 4.6
05_01_0313 - 2461487-2461861,2461929-2462513,2462819-2464154,246... 27 4.6
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 27 4.6
11_02_0117 + 8480350-8480424,8480958-8481223,8481254-8481374,848... 26 6.1
10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316... 26 6.1
09_02_0290 - 6963673-6963966,6964279-6964590,6964693-6964832,696... 26 6.1
06_01_0557 - 3959122-3959689,3960084-3960280,3960882-3961082,396... 26 6.1
02_05_1091 + 34044999-34045082,34046848-34047048,34047312-340475... 26 6.1
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 29.1 bits (62), Expect = 0.86
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 264 SLLVTMSSSLWRLPSDTLPP*TVVPHPSRSTKIPWGITTP 145
SL T+SS+L R+PS +LPP ++ +P I P
Sbjct: 394 SLTNTLSSTLQRVPSSSLPPQELLECKQAKVSMPPSIRIP 433
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 178 SARMGNYRSRRQCI*RQPPQARTHCDQQRKLQG 276
SAR R I +PP R HC+++R+++G
Sbjct: 86 SARNCRRRRHHPRIRLRPPPTRRHCEREREMRG 118
>08_02_1267 +
25728324-25728407,25728436-25728502,25728753-25728828,
25729388-25729450,25729640-25729896,25731299-25731440,
25731524-25732017,25732398-25732536,25733805-25733876,
25733960-25734040,25734677-25734843,25734942-25735147,
25735301-25735427,25735515-25735639
Length = 699
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -2
Query: 235 VEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM 95
V++A ++ L + E I N L +D +LDN+TL+ ++ + M
Sbjct: 299 VDIATKFFVVLYFAEV-EAIQGNALRQFDIILDNNTLVSAFSPISMM 344
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 61 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 171
L GC+ N C R K+P C P C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325
>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
Length = 312
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 231 RLPSDTLPP*TVVPH-PSRSTKIPWGITTPCWIIAPCWMF 115
+LPS +LPP PH P ST + T+PC P F
Sbjct: 6 KLPSPSLPPSRSSPHVPPCSTLLHQAPTSPCQAPRPTSCF 45
>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
Length = 533
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 139 PTRCRNTPGYFC*SARMGNYRSRRQCI 219
P C NT G F S GNY CI
Sbjct: 102 PGICNNTMGSFTCSCHQGNYMENGTCI 128
>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 181 QINKNTLGYYDTLLDNSTLLDVWAEVDGMC 92
+IN+N LGY LL + LDV A ++ C
Sbjct: 1575 EINRNELGYTHLLLASRLPLDVGAYLERTC 1604
>03_06_0412 +
33749039-33749077,33749585-33749728,33750110-33750862,
33750959-33751778,33751893-33752140,33752285-33752391,
33753098-33753248,33753339-33753530,33753905-33754042
Length = 863
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 210 PP*TVVPHPSRSTKIPWGITTPCWIIAPCWMF 115
PP + P + K +G WI+ P W+F
Sbjct: 660 PPIVLSPKKVSTAKFLYGCAINSWILNPSWLF 691
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 55 GELRQGCEHRTSNTCHPLRPKHPAGCYYP 141
G R+ C+H + CHP P C +P
Sbjct: 688 GAPRRECKHTCTAPCHPSSPCPDLRCEFP 716
>05_01_0313 -
2461487-2461861,2461929-2462513,2462819-2464154,
2464231-2464338,2464421-2464743
Length = 908
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 268 VFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLG 158
VFF+GHN + EVAV ++ S PSE + +G
Sbjct: 794 VFFLGHNLHRIAEVAV---YKMDFSGPSEWCKVDGIG 827
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +1
Query: 61 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF---C*SARMGN 195
L GC+ N C R ++P C P C NTPG F C +GN
Sbjct: 276 LLDGCQD--INECDESRFRYP--CSVPGTCVNTPGGFTCTCPDKTIGN 319
>11_02_0117 +
8480350-8480424,8480958-8481223,8481254-8481374,
8481463-8481726,8482210-8482581
Length = 365
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -2
Query: 262 FVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGMCYSY 83
F +FE ++ Y AAL GS + NT+ ++ + + L V +DG
Sbjct: 107 FQSLEQFEGLQPPPYYVAALAGSFYTRLFPSNTVHFFHSSMSVMWLSQVPENLDGSMNEG 166
Query: 82 DAHI 71
+ HI
Sbjct: 167 NVHI 170
>10_08_0825 + 20831170-20831349,20831380-20831547,20831627-20831698,
20831997-20832075,20832182-20832375,20832469-20832558,
20832851-20832940,20833196-20833282,20833477-20833560,
20833690-20833809,20834096-20834103,20834443-20834575,
20835044-20835125,20835330-20835496,20836006-20836493,
20836551-20836638,20836716-20836818,20836932-20837083,
20837191-20837316,20837459-20837529,20837691-20837753,
20838418-20838490,20838972-20839040,20839180-20839257,
20839434-20839484,20839586-20839696
Length = 1008
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 8 EISYVHFAVNHPEFSEENYDKDVSIV 85
E YVH+A +HPE+S+ V++V
Sbjct: 961 ETEYVHWARSHPEYSKSQVVGLVNLV 986
>09_02_0290 -
6963673-6963966,6964279-6964590,6964693-6964832,
6965124-6965187,6965263-6965493,6965580-6965714,
6966484-6966517,6966664-6966692
Length = 412
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 186 PSRSTKIPWGITTP 145
P ST +PWG TTP
Sbjct: 80 PGTSTVLPWGCTTP 93
>06_01_0557 -
3959122-3959689,3960084-3960280,3960882-3961082,
3962300-3962383,3962667-3962783
Length = 388
Score = 26.2 bits (55), Expect = 6.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -2
Query: 115 WAEVDGMCYSYDAHILVVILLREFG 41
W+++ G Y D H+ + L + FG
Sbjct: 97 WSDIGGRQYMEDTHVCITDLAKNFG 121
>02_05_1091 +
34044999-34045082,34046848-34047048,34047312-34047523,
34047846-34048413
Length = 354
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 115 WAEVDGMCYSYDAHILVVILLREFG 41
W+++ G Y DAH+ + L FG
Sbjct: 58 WSDIGGRDYMEDAHVCISDLANNFG 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,796,632
Number of Sequences: 37544
Number of extensions: 205232
Number of successful extensions: 582
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -