Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9h19
(326 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
S76959-1|AAB33934.1| 85|Apis mellifera olfactory receptor prot... 24 0.54
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 23 0.94
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 0.94
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 0.94
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 23 1.2
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 20 6.6
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 20 6.6
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 20 6.6
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 20 6.6
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 20 6.6
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 20 6.6
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 20 6.6
>S76959-1|AAB33934.1| 85|Apis mellifera olfactory receptor
protein.
Length = 85
Score = 23.8 bits (49), Expect = 0.54
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 115 WAEVDGMCYSYDAHILVVILLREFGMV-NSKVNIRYFTG 2
W + G C S HI++V L EFG++ + K++ ++ G
Sbjct: 46 WFKAIGTCGS---HIIIVGLFYEFGLITHVKLSSDWYMG 81
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 23.0 bits (47), Expect = 0.94
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -3
Query: 141 WIIAPCWMFGPKWMACVTRTMLTSL 67
W+I PC F W C+ ++ +L
Sbjct: 79 WVIHPCSSFRFYWDLCMLLLLVANL 103
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 23.0 bits (47), Expect = 0.94
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -3
Query: 141 WIIAPCWMFGPKWMACVTRTMLTSL 67
W+I PC F W C+ ++ +L
Sbjct: 79 WVIHPCSSFRFYWDLCMLLLLVANL 103
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 23.0 bits (47), Expect = 0.94
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -3
Query: 141 WIIAPCWMFGPKWMACVTRTMLTSL 67
W+I PC F W C+ ++ +L
Sbjct: 79 WVIHPCSSFRFYWDLCMLLLLVANL 103
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 22.6 bits (46), Expect = 1.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 88 SNTCHPLRPKHPAGCYYPTRCRNTPGYF 171
S++C + Y T CR PGYF
Sbjct: 276 SHSCEACPAHSKSSDYGFTECRCDPGYF 303
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 20.2 bits (40), Expect = 6.6
Identities = 5/11 (45%), Positives = 9/11 (81%)
Frame = +2
Query: 26 FAVNHPEFSEE 58
+A+NHP + +E
Sbjct: 336 YAINHPRYRQE 346
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 20.2 bits (40), Expect = 6.6
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1
Query: 299 RDHDPCTVPCSF 264
R+HDP P SF
Sbjct: 400 REHDPAKFPPSF 411
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 20.2 bits (40), Expect = 6.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -1
Query: 101 WHVLLVRCSHPCRNSP 54
W + V CS P R +P
Sbjct: 385 WQMSCVACSPPPRQTP 400
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 20.2 bits (40), Expect = 6.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +2
Query: 32 VNHPEFSEENY 64
+N EF++ENY
Sbjct: 55 INESEFNDENY 65
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 20.2 bits (40), Expect = 6.6
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -1
Query: 326 RRRICYQSRRDHDPCTVPCSFLCWSQ*VRACGG 228
RRR+ QS R + CW+ + GG
Sbjct: 237 RRRMMMQSGRAKSEILYKSTLHCWATIYKTEGG 269
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 20.2 bits (40), Expect = 6.6
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -1
Query: 326 RRRICYQSRRDHDPCTVPCSFLCWSQ*VRACGG 228
RRR+ QS R + CW+ + GG
Sbjct: 237 RRRMMMQSGRAKSEILYKSTLHCWATIYKTEGG 269
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 20.2 bits (40), Expect = 6.6
Identities = 5/11 (45%), Positives = 9/11 (81%)
Frame = +2
Query: 26 FAVNHPEFSEE 58
+A+NHP + +E
Sbjct: 336 YAINHPRYRQE 346
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,736
Number of Sequences: 438
Number of extensions: 2168
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7217694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
- SilkBase 1999-2023 -