Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9h14
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 297 1e-81
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 63 3e-11
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 33 0.056
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.1
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 3.7
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 26 4.9
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 26 4.9
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 26 6.5
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 26 6.5
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 25 8.6
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 297 bits (729), Expect = 1e-81
Identities = 141/230 (61%), Positives = 178/230 (77%), Gaps = 1/230 (0%)
Frame = +1
Query: 55 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN-AP 231
MDEEYDVIVLGTGL EC+LSG+LSV GKKVLHIDRN YYG +SAS+ L +L+A F
Sbjct: 1 MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLN-LTQLYALFRPGE 59
Query: 232 APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 411
E+ GR RDW VDL+PKFLMANG L +LI+T VTRY+EFK I GSYVY+ G+I+KVP
Sbjct: 60 QRPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVP 119
Query: 412 VDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRN 591
++ EAL S LM +FEKRR + FL +V +++E+D T+KD + +M+S++ KFGL
Sbjct: 120 GNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSG 179
Query: 592 TQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKYGKSPYLYPLYG 741
TQDF GHA+ALYLDD YL++PA +T RI LY+ S+AK+GKSPY+YPLYG
Sbjct: 180 TQDFIGHAMALYLDDAYLKKPARETRERILLYASSIAKFGKSPYIYPLYG 229
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 63.3 bits (147), Expect = 3e-11
Identities = 65/251 (25%), Positives = 104/251 (41%), Gaps = 26/251 (10%)
Frame = +1
Query: 67 YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT--PLEELFAKFNAPAPD 240
YDVI++GT L+ ILS LS + ++VLHID N +YG S+T LE++ K
Sbjct: 7 YDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIKKVDSS 66
Query: 241 ETYGRG------------RDWNVDLIPK-----------FLMANGLLVKLLIHTGVTRYL 351
+ + N DLIPK + A+ LVKLL T + +YL
Sbjct: 67 QILNDNGSHKSPLKRFEVQFLNKDLIPKNKGSVIQFHPQEIFASSELVKLLSETKIYKYL 126
Query: 352 EFKSIEG-SYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWK 528
K + + KVP + + + + + KR F+ +V + +E +
Sbjct: 127 LLKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLASKRIVMRFMKFVSNIADEQNQNLV 186
Query: 529 DFDPSTANMQSLYDKFGLDRNTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKY 708
S + L + F L ++ + L L + + A+ T+ + Y S Y
Sbjct: 187 KEWESKPFYKFLEEVFQLSGAIEESIIYGLCQSLSKDIPTKDALDTVLK---YFHSFGMY 243
Query: 709 GKSPYLYPLYG 741
G YL +YG
Sbjct: 244 GDYSYLLAMYG 254
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 32.7 bits (71), Expect = 0.056
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 61 EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRN 162
++ D+I++G G+ C L L G+KVL ++R+
Sbjct: 4 QDADIIIIGAGITGCALGAALGRQGRKVLVLERD 37
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 133 GKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 303
GKK + +RN Y ++ PL K + P+ ++ + +D N D + L+ N
Sbjct: 2 GKKSVSFNRNNYKKRKNERTEPLPRRIFKNDKPSKFKSKRKEKDKNSDAYDEMLLNN 58
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 199 LEELFAKFNAPAPDETYGRGRDWNVDLIPKF 291
L L K A AP +TY + W +PKF
Sbjct: 32 LRSLIEKEEAAAPPKTYEDFKFWKTQPVPKF 62
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 475 NFLIYVQDFQEEDAKTWKDFDPSTANM 555
N LIY+ + Q TWKD+DP++ M
Sbjct: 22 NELIYIDEEQ-----TWKDYDPNSLKM 43
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 122 CRFLGRRFCTSIAISTTVVNLRQL 193
CR L R+F ++ +ST++V ++QL
Sbjct: 116 CRILTRKFRLAVYLSTSLVYIKQL 139
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 229 PAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV 339
P P + G + + V F++ANG L+K LIH +
Sbjct: 14 PRPAQALGINQPF-VSAYLSFVLANGFLLKWLIHYSI 49
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 25.8 bits (54), Expect = 6.5
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = -1
Query: 456 KHAHKIRRKSFFLIDRYFGDFSTFVNITSFDGLKLQVPGDARVNKQFD*QSISHQKLRNQ 277
K +HK+ ++S FL D + DF+ F+ I D + Q + R +F S + +R++
Sbjct: 378 KFSHKMLKRSQFLNDHFDADFN-FIQI-DHDPITNQ---ETRKPVKF---SKPTKDIRSR 429
Query: 276 V-NVPVSTSTVCFIRCRCVELSEQLL 202
+ VP ST IR ++L E+ L
Sbjct: 430 LKEVPTSTDEEFIIRQELMDLLEKCL 455
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 76 IVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 183
IV+G GL + + G VL +D+N +GG S
Sbjct: 42 IVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGGNS 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,029
Number of Sequences: 5004
Number of extensions: 71270
Number of successful extensions: 225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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