Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9h10
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         34   0.019
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    27   2.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   3.7  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.5  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   8.6  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   8.6  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.6  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   8.6  

>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 339 NSH*AHSLECCIITFYCRGNYLLVCCNG*DIHNSFL 446
           N H +  ++CC   F  R  +LL+ CN   IH ++L
Sbjct: 100 NEHFSFPVKCCAYQFILRNRFLLIWCNSETIHLTYL 135


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 542 IRRFHSIMAHIYFNDYSFTAEIVCITYA 459
           IR F S ++ ++F D+ F  ++V +TYA
Sbjct: 412 IRVFLSGLSTVHFQDFFFADQMVSLTYA 439


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -1

Query: 592 FVNVTVQQKVKSHFFLTLDGFIASWRTFISMIIPSQQRSFVLRMQL--HHPKKLLWMSY 422
           ++ V V + ++S+FFLTL+  +A    F+  + P   R ++L   L    PK LL + Y
Sbjct: 509 WITVLVAKFLESYFFLTLN--LADSIRFLGAMRPYDCRDYILGAGLCKAQPKILLSLLY 565


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 537 SNVKKKWDFTFCWTVTFTKCGKK 605
           SNV +K +  FCW+  + K  +K
Sbjct: 135 SNVNRKSNVLFCWSTAYQKQKRK 157


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 598 PHFVNVTVQQKVKSHFFLTLDGFIASWR--TFISMII 494
           P F N  ++    +   +TL G+I  W   TFI+ ++
Sbjct: 212 PEFANTFIRSIPSNEGLITLSGYIKFWAYFTFIASVL 248


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 124 KKNVQNCT*NLLSLLTIIRSFHGYYCRTTTTF 29
           K+N  N      +LLT++RSFHG +   T  +
Sbjct: 594 KENENNFWNLKFNLLTMLRSFHGSFTDETNGY 625


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 602 FAAFCKCHCPTKGKVPFFFDIRRF 531
           F  F  C C  KG+  FF D R F
Sbjct: 391 FLKFMICSCMVKGESNFFLDNRIF 414


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 554 FFFDIRRFHSIMAHIYFNDYSFTAEIVC 471
           F FD+  FHS + H+ F      +E  C
Sbjct: 91  FTFDLSNFHSQIIHLRFKGTRQQSEFFC 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,521
Number of Sequences: 5004
Number of extensions: 48019
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)