Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9h10
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600...    28   5.0  
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225...    28   6.6  
01_06_0749 - 31655348-31657339                                         27   8.7  

>04_04_0590 +
           26457514-26457801,26458849-26459325,26459817-26460027,
           26460219-26460376,26460461-26460531,26460707-26460812,
           26460880-26460966,26461591-26462148,26462245-26462308,
           26463352-26463485,26463568-26463621,26464321-26464417,
           26465620-26465825,26465901-26465984,26466265-26466330,
           26466883-26466956,26467664-26467751,26467830-26467928
          Length = 973

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 482 EIVCITYAIASP*KTIMDVLPVTADQQIITPTV 384
           E+ C   A+ +P  T  DV+PV  +QQ+IT +V
Sbjct: 467 EVSCSVQAV-NPIPTNADVMPVAPNQQLITSSV 498


>07_03_0961 -
           22921761-22921850,22922204-22922338,22922409-22922531,
           22922621-22922707,22922780-22922831,22922939-22923063,
           22923724-22923932,22924206-22924407,22924526-22924630,
           22925353-22925414,22925755-22925944,22926017-22926112,
           22926203-22926305,22927019-22927122,22927264-22927395,
           22928257-22928343,22929121-22929206,22929291-22929383,
           22932197-22932284,22932402-22932514,22932621-22932743,
           22934153-22934204,22934365-22934408,22934498-22934571,
           22934655-22934746,22935594-22935661,22937146-22937221,
           22937323-22937679
          Length = 1055

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 581 HCPTKGKVPFFFDIRRFHSIMAHIYFNDYSFTAEIVCITYAI 456
           HCP     P    +    + +   Y NDY++ A++  + YA+
Sbjct: 631 HCPLSRSSPESIVLTDMFTRLLMDYLNDYAYDAQVAGLYYAV 672


>01_06_0749 - 31655348-31657339
          Length = 663

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -3

Query: 563 KVPFFFDIRRFHSIMAHIYFNDYSFTAEIVCITYA 459
           K P  FD+ + HS++  + ++ Y + +  +  +YA
Sbjct: 350 KDPSVFDLLQIHSLVTRLGYDGYDYVSSAIISSYA 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,056,854
Number of Sequences: 37544
Number of extensions: 260847
Number of successful extensions: 419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)