Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9h03
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0159 - 1807806-1809386 29 2.3
07_03_0293 + 16321539-16321893,16322020-16322207,16322881-163229... 29 2.3
09_04_0351 + 16904075-16904738,16906285-16906366,16906533-169066... 29 4.1
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740... 29 4.1
07_03_1229 + 25023537-25024094 28 5.4
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435... 28 5.4
03_04_0094 + 17264501-17265361 28 5.4
01_03_0068 - 12188426-12188767 28 5.4
01_01_0652 + 4975091-4975585 28 5.4
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 28 7.1
01_06_0038 - 25819433-25820344 28 7.1
10_05_0080 - 8907628-8908182 27 9.4
07_03_0829 - 21792924-21793247,21793332-21793482,21793577-217938... 27 9.4
02_04_0346 - 22183145-22183264,22183877-22183966,22184140-221842... 27 9.4
02_01_0006 - 42752-43816 27 9.4
01_01_1141 + 9052511-9052573,9052626-9052928 27 9.4
>10_01_0159 - 1807806-1809386
Length = 526
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 523 GGSLA-VVPRHGGRHSEGALVGLHAAQVCXXXXXXXRDLSVH 401
GGSLA VV R+GGR EGA V +AA V L VH
Sbjct: 94 GGSLADVVARNGGRLDEGA-VRTYAADVLRGLDYLHGKLVVH 134
>07_03_0293 +
16321539-16321893,16322020-16322207,16322881-16322904,
16323497-16323550,16323854-16323944,16324715-16324815,
16324949-16324999,16326626-16326754,16327772-16327834,
16327928-16328171,16329628-16329776,16329855-16329944,
16330343-16330477,16330579-16330635,16331079-16331135,
16332299-16332336,16332532-16332601,16332971-16333207
Length = 710
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -2
Query: 603 RVVVTIPTSLPSASAHSAMDCTRLVTSVEASQSCLGTAAVTPRVPWLAFTPHRYAVAV 430
R ++ P S P A A+D V A+ + + AVT W +PHR +AV
Sbjct: 44 RAYISAPASGPDAYPSPALDAAAAAADVAAAIA--SSDAVTWAGVWALLSPHRARIAV 99
>09_04_0351 +
16904075-16904738,16906285-16906366,16906533-16906697,
16906811-16906929,16906930-16907156
Length = 418
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 279 MPSPRNMTTFLAWPAACFAPAPSRSRLSIASCASRT 172
MP P + LA AA A AP+RS+ ++ SC+S T
Sbjct: 1 MPPPLLLLLLLA--AAAAAVAPARSKSTLESCSSST 34
>04_04_1060 -
30473509-30473619,30473815-30473850,30474063-30474095,
30474246-30474335,30474466-30475215
Length = 339
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 272 DGMSVPTLAAARTLLGQRRGQTGEEASLHFEQFPTLGLAKTYCVNAQVPDSSCTATAYLC 451
DGMS L A +G GEE E P + + +T+C+ + + CT C
Sbjct: 275 DGMSYEELLALGDRIGTEEYSDGEEVGKMIE--PFVRILQTFCIIGLLQFTICT-----C 327
Query: 452 GVKANQGT 475
V+ +GT
Sbjct: 328 AVRTWKGT 335
>07_03_1229 + 25023537-25024094
Length = 185
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 541 AVHRRVGTG*RERCRYSDDHSHHACLS 621
A RR+ TG RCR D + HHACL+
Sbjct: 31 ACERRI-TGDGYRCRKCDFNIHHACLA 56
>04_04_1354 -
32841778-32841983,32842079-32843093,32843184-32843518,
32843590-32844019,32844155-32844214,32844531-32844651,
32845321-32846132
Length = 992
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 621 GEACVMRVVVTIPTSLPSASAHSAMDCT 538
G CV V PTSLP + H A C+
Sbjct: 411 GSPCVPHVGARHPTSLPFSDGHQATSCS 438
>03_04_0094 + 17264501-17265361
Length = 286
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 293 LAAARTLLGQRRGQTGEEASLHFEQFPTLGLAKTYCVNAQVPDSSCTATAYL 448
+ AAR LG+ G GE+AS + A + A +PD++ A A L
Sbjct: 42 IQAARAALGEAAGLIGEDASAAETLDADVWSALAHAGQAPIPDATVDAAAKL 93
>01_03_0068 - 12188426-12188767
Length = 113
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +1
Query: 460 GQPRHPRSDGRRAEARLRGFHRRHQAGAVHRRVGTG*RERCRYSDDHSHHA 612
G P + S GR + R RG RRH + G RCR D H A
Sbjct: 31 GSPPYGSSGGRHSGGR-RGLWRRHGSSLHAHGSIAGDNGRCRSGDGLKHEA 80
>01_01_0652 + 4975091-4975585
Length = 164
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 433 GDGIPVRREGQPRHPRSDGRRAEARLRGFHRRHQAGAVHR 552
G P RR + RH + G+R EA +G +R G R
Sbjct: 21 GGWAPTRRRPEGRHGEAAGKRREAAGKGGRQREARGGGRR 60
>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 416 PDSSCTATAYLCGVKANQG 472
P++SC A A +CGV+ +QG
Sbjct: 1840 PENSCDARAAICGVQDSQG 1858
>01_06_0038 - 25819433-25820344
Length = 303
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 451 RREGQPRHPRSDGRRAEARLRGFHRRHQAGAVHRRVGTG*R 573
+++ QP+ R GR A +RLR AG HR+VG G R
Sbjct: 75 QQQQQPQQQRRKGRTAVSRLRTALAAALAGR-HRQVGLGAR 114
>10_05_0080 - 8907628-8908182
Length = 184
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 237 AACFAPAPSRSRLSIASCASRTQK 166
A CF P+P+ SR S SC S+ +
Sbjct: 48 AGCFRPSPTSSRSSPPSCNSQADR 71
>07_03_0829 -
21792924-21793247,21793332-21793482,21793577-21793811,
21793900-21794110,21794218-21794435,21794536-21794671,
21796732-21797517
Length = 686
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -1
Query: 598 GRHYTDISPVSQCPLGDGLHPLGDVGGSLAVVPRHGGRHSEGALV 464
G Y DI P + + + P+ GSLAVV GG G LV
Sbjct: 68 GIWYRDIDPPTVVWVANRDAPVSGTAGSLAVVVNGGGGGGGGRLV 112
>02_04_0346 -
22183145-22183264,22183877-22183966,22184140-22184220,
22184430-22184589,22184723-22184787,22185370-22185441,
22186163-22186327
Length = 250
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 547 GLHPLGDVGGSLAVVPRHGGRHSEGALVGLHAAQVC 440
G H DVGG +A R G GAL+G+ ++C
Sbjct: 2 GDHVAVDVGGLMA--SRGAGEEETGALIGMVECRIC 35
>02_01_0006 - 42752-43816
Length = 354
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = -2
Query: 381 PRVGNCSKC---KLAXXXXXXXXXXXXXRAAASVGTDMPSPRNMTTFL 247
P G CS C +L+ AAA + T++P PR TT L
Sbjct: 102 PFTGFCSACLLERLSTAPARCFPSPSPVAAAAEISTEIPQPRVRTTLL 149
>01_01_1141 + 9052511-9052573,9052626-9052928
Length = 121
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 400 RERSSPGLVVHGDGIPVRREGQPRHPRSDG 489
R+ + V G G P RR G+ R PR G
Sbjct: 53 RQSTGGSCEVGGGGRPARRRGESRRPRDGG 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,891,531
Number of Sequences: 37544
Number of extensions: 268031
Number of successful extensions: 1143
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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