Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9h03
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000299-6|AAC47978.1|  297|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL132876-29|CAF31497.1|  840|Caenorhabditis elegans Hypothetical...    27   8.5  
AL132876-27|CAD21658.1|  906|Caenorhabditis elegans Hypothetical...    27   8.5  

>AF000299-6|AAC47978.1|  297|Caenorhabditis elegans Hypothetical
           protein E03H12.2 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 353 LHFEQFPTLGLAKTYCVNAQVPDSSCT 433
           +HF+    L L +TYC+ A   DSSCT
Sbjct: 22  IHFDSCINLCLKETYCMLAFGNDSSCT 48


>Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical
           protein ZK1058.9 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 293 LAAARTLLGQRRGQTGEEASLHFEQFPTLGLAKTYCV 403
           LAAA+ LL   RGQ+ E+ +  +    TLGLA   CV
Sbjct: 34  LAAAKRLLDDSRGQSWEKLARKY----TLGLAAAPCV 66


>AL132876-29|CAF31497.1|  840|Caenorhabditis elegans Hypothetical
           protein Y105E8A.7b protein.
          Length = 840

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 329 GQTGEEASLHFEQFPTLGLAKTYC 400
           GQ G+E  LHFEQF   G     C
Sbjct: 521 GQPGKEILLHFEQFALSGNTDNNC 544


>AL132876-27|CAD21658.1|  906|Caenorhabditis elegans Hypothetical
           protein Y105E8A.7a protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 329 GQTGEEASLHFEQFPTLGLAKTYC 400
           GQ G+E  LHFEQF   G     C
Sbjct: 521 GQPGKEILLHFEQFALSGNTDNNC 544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,224,898
Number of Sequences: 27780
Number of extensions: 169029
Number of successful extensions: 566
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)