Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9g24
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.82 
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    28   1.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.3  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    26   4.4  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    26   5.8  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   7.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.6  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 26/90 (28%), Positives = 44/90 (48%)
 Frame = +2

Query: 374 LTSRSIR*TAPASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRTGPPQTRRGR 553
           ++S S+  + P + S  S L    +S++PS  +T S   S  AP  TSS +    +    
Sbjct: 159 ISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS-SYLSSSSVVS 217

Query: 554 AAHQPSSTPSSWRVTSPTASGKVIKTCESS 643
           ++  PSS+ SS   +S  ++  +  T  SS
Sbjct: 218 SSSSPSSSSSSTLTSSSLSTSSIPSTSSSS 247


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 503 P*PTSSRTGPPQTRRGRAAHQPSSTPSSWRV 595
           P PT+     P+  RG+A ++PS    +W++
Sbjct: 337 PVPTNVVKANPRVNRGKAGYEPSENIINWKI 367


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 351 NPVLSHG-GLLLDRYGEPPRLREAILRC 431
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 581 SSWRVTSPTASGKVIKTCESSFNDYHLVD 667
           S + V  P+ +G  + T +SSF + H++D
Sbjct: 590 SGYPVVVPSLTGSDVNTKDSSFAERHIID 618


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 651 SLKLLSQVLMTFPDAVGDVTLQLEGVLE 568
           +L+LLS+    FPD++  V L ++G  +
Sbjct: 60  NLQLLSRYFQKFPDSIDKVFLSVKGAFD 87


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
 Frame = +1

Query: 271 IRDEW---LTMEQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATE 441
           +RD++   LTM Q C N+  KQ    + A  Q L+ G+      V R   ++L       
Sbjct: 341 LRDQYSLHLTMAQECMNIFEKQQLNLIGAIEQDLSTGSNVE-GKVPRSVLSELLPLLDEG 399

Query: 442 EREHATK---LIDYLLMRGKLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSI 612
             E +TK   L+ Y++ R  +   + DL      +N S  S     ++  +L + V  ++
Sbjct: 400 NAEESTKIRLLLLYIIYRDGII--LQDLFRLFRHSNLS-TSREQIFQNLEQLGTRVIKNL 456

Query: 613 REGHQDLREQLQRLPPG 663
            +     +E    LP G
Sbjct: 457 TDQSSKRKEVANSLPAG 473


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +2

Query: 503 P*PTSSRTG----PPQTRRGRAAHQPSSTPSSWRVTSPTASGKVI 625
           P P S+  G    PPQ R       P S PS+ R   P +S + +
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAV 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,810
Number of Sequences: 5004
Number of extensions: 46787
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)