Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9g12
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...   100   2e-22
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   6.3  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   8.3  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score =  100 bits (240), Expect = 2e-22
 Identities = 54/150 (36%), Positives = 81/150 (54%)
 Frame = +1

Query: 259 GQATCHTHPHLIQQGHLTCGITQKEYAERRETLISRLVSEAPNVHKTHIVVIPAARKQFM 438
           GQAT  THPH++Q G LT  I+ +EY  RR+ + S L            +++ +A  + M
Sbjct: 42  GQATDSTHPHILQPGELTPRISAQEYKTRRDRVASLL-------EDNDFMIVTSAPVRHM 94

Query: 439 SDKIPYVFRQNSDFFYLTGCLEPSAILVMIKPAHSDTFKSVLFVHEKDSHAELWEGPRTG 618
                Y + Q+ +F+YLTGCLEP+A+L+M K   S ++   L++  K+ + E WEG RTG
Sbjct: 95  CGAAFYEYHQDPNFYYLTGCLEPNAVLLMFKNGASGSYDCSLYLPSKNPYIEKWEGLRTG 154

Query: 619 CTAATQLFAVDEARPVDSFSVYINKLAASS 708
            T   +LF ++        S  IN L   S
Sbjct: 155 STLGKKLFQIENVYDSSLASSVINALGKKS 184


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 249  LWYRECRSLYRSRGVVNCRKASKLISY 169
            +WYRECRS Y    V++ +   + I Y
Sbjct: 1003 VWYRECRSHYFISPVLSNQVIDEKIQY 1029


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 208 PPGAVERPTLSIPQGTFGQATCHTHPHLIQQGHLTCGITQKEYAERRETLISRL 369
           P   V  P  ++PQ     A+ HT   +      T   T+ E+A +RE + ++L
Sbjct: 370 PTPPVSYPAHNVPQKGVRPASPHTLKSVKDDLKRTKTYTKAEFAAKREEIFNKL 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,421
Number of Sequences: 5004
Number of extensions: 62098
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)