Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9g12
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    32   0.36 
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonin...    28   5.9  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    28   5.9  
AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik...    28   7.8  

>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 32/129 (24%), Positives = 49/129 (37%)
 Frame = +1

Query: 334 YAERRETLISRLVSEAPNVHKTHIVVIPAARKQFMSDKIPYVFRQNSDFFYLTGCLEPSA 513
           + E R  L+  L S+ P  +   ++     + ++ +D     FRQ S FF+  G  E S 
Sbjct: 17  FTENRHRLVDALKSKVP-ANSVVLLQGGVEKNRYNTDAADLPFRQESYFFWTFGVNE-SE 74

Query: 514 ILVMIKPAHSDTFKSVLFVHEKDSHAELWEGPRTGCTAATQLFAVDEARPVDSFSVYINK 693
               I        K+ LF    D    +W+G         + +AVDE    D  +    K
Sbjct: 75  FYGAIDVRSGG--KTTLFAPRLDPSYAIWDGKINNEQFFKEKYAVDEVVFNDKTTTIAEK 132

Query: 694 LAASSKPSV 720
           L   S   V
Sbjct: 133 LKELSAKHV 141


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +1

Query: 148  HKLLKSHIRNQLRCLSTIDHPPGAVERPTLSIPQGTFGQATCHTHPHLIQQGHLTCGITQ 327
            H+++K  +      +ST+    GA++R  ++IP           H H + +   T    Q
Sbjct: 3330 HEIVKGRVEKIGGLISTVQVLIGAIKRRLVAIPANADEFIRTKEHLHPLSKLSQTDETAQ 3389

Query: 328  K--EYAERRETLISRLVSEAPNVHKTHIVV 411
            K  ++AE+  TLI  +      +  T  VV
Sbjct: 3390 KLTKWAEKLSTLIGNMKRSNDQLSTTFSVV 3419


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
 Frame = +1

Query: 265  ATCHTHPH----LIQQGHLTCGIT----QKEYAERRETLISRLVSEAPNVHKTHIVVIPA 420
            +TC  +P      I  G    G+T    QKE+   ++T   +L+S  P + K  +V  P 
Sbjct: 1136 STCQNNPECEYDFIMTGRKEVGLTTLRRQKEFFALQKTGSKQLISCGPLLKKEGVVKTPP 1195

Query: 421  ARKQFMSDKIPYVFRQNSDFFYLTGCLE 504
            A      DK+ +  +     +Y+ G +E
Sbjct: 1196 AANYLDGDKVVFSCKPK---YYIHGDIE 1220


>Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 856

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 229 PTLSIPQGTFGQATCHTHPHLIQQGHLTCGITQKEYAERRETLISRLVSEAPNVHKTHIV 408
           P+ S P G+   A  H H H  QQ   +  + Q+   ER + L  R   + PN H    +
Sbjct: 414 PSSSSPTGSAVSAQ-HQHQHQQQQEPASSPVVQR--IERPDQLPRRTTLQDPNAHDIERM 470

Query: 409 VIP 417
            +P
Sbjct: 471 TMP 473


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 643 QTAVWQPCSQFEDLPTVLHDCLSREQIVHS-*KYHCVL 533
           +TA   P  +  D  T+  +CL+ +Q +HS  K HCV+
Sbjct: 864 ETAQACPVCESNDYETINGECLNGKQTIHSIPKKHCVI 901


>AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical
           protein Y60A3A.1 protein.
          Length = 856

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 229 PTLSIPQGTFGQATCHTHPHLIQQGHLTCGITQKEYAERRETLISRLVSEAPNVHKTHIV 408
           P+ S P G+   A  H H H  QQ   +  + Q+   ER + L  R   + PN H    +
Sbjct: 414 PSSSSPTGSAVSAQ-HQHQHQQQQEPASSPVVQR--IERPDQLPRRTTLQDPNAHDIERM 470

Query: 409 VIP 417
            +P
Sbjct: 471 TMP 473


>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical
           protein F01G4.1 protein.
          Length = 1474

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 210 PWSGRETYTLYTTRHLRPSNLSHPSALDPTGASYLRDH 323
           P+   + + L+  R  RP+ +S PS +DP G    R++
Sbjct: 147 PYDLMKIFNLHQIRCNRPTTISVPSGIDPVGMLKQREN 184


>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical
           protein F01G4.1 protein.
          Length = 1474

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 210 PWSGRETYTLYTTRHLRPSNLSHPSALDPTGASYLRDH 323
           P+   + + L+  R  RP+ +S PS +DP G    R++
Sbjct: 147 PYDLMKIFNLHQIRCNRPTTISVPSGIDPVGMLKQREN 184


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 363 QTCE*SSECAQNTYCSNPSC 422
           Q C+ SS+C  N+ C+N  C
Sbjct: 198 QNCQISSQCIDNSVCNNQMC 217


>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
           protein protein.
          Length = 1474

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 210 PWSGRETYTLYTTRHLRPSNLSHPSALDPTGASYLRDH 323
           P+   + + L+  R  RP+ +S PS +DP G    R++
Sbjct: 147 PYDLMKIFNLHQIRCNRPTTISVPSGIDPVGMLKQREN 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,793,610
Number of Sequences: 27780
Number of extensions: 361142
Number of successful extensions: 853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)