Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9g06
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       97   2e-21
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    28   1.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.0  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   4.5  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    26   6.0  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   6.0  

>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 56/155 (36%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
 Frame = +1

Query: 247 YGKSSVKLLH--VHRDEGHHVIREFEVFTELKLASETAYILGDNKEVVATDSQKNTVYLL 420
           YGK+ V+ +   +      H + E +V + L    E +Y   DN  VV TD+QKNT+Y+ 
Sbjct: 12  YGKTLVRFMKKDICPKTKTHTVYEMDVQSLLTGELEESYTKADNSIVVPTDTQKNTIYVF 71

Query: 421 AKKYGVKTPEEFGAVVVNHFLYMYKQVLEAKCRVIEYPWERLQA-GTPHSHAFVFSPIAT 597
           AK   V  PE F A +  HF+  YK +  A   +   PW R++  G PHSH+F+ +P  T
Sbjct: 72  AKNNDVSVPEVFAAKLAKHFVDKYKHIHGAALDITITPWTRMEVQGKPHSHSFIRNPGET 131

Query: 598 RWSEVSQTRHEAVVVKSGLSGLRVLKTTQSAFVDF 702
           R + V  +  +   V S L  + VLK+T S F +F
Sbjct: 132 RKTHVVFSEGKGFDVVSSLKDVLVLKSTGSGFTNF 166


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 133 KPSSTSANETPSPSLASPRVALTAAEDSGGRFEL 234
           KPS  SANET +P LAS    L   ++   R EL
Sbjct: 43  KPSVNSANETKNPKLASLEFQLENLKNDLKRKEL 76


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 33/130 (25%), Positives = 49/130 (37%)
 Frame = -2

Query: 698 STNADCVVFNTRSPLRPDLTTTAS*RVCDTSDHRVAIGEKTKAWL*GVPACSRSQGYSIT 519
           STN+      T S L     T++S     T+   +A    T + L      S S   S T
Sbjct: 95  STNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSST 154

Query: 518 RHFASSTCLYIYKK*LTTTAPNSSGVFTPYFFASKYTVFFCESVATTSLLSPKMYAVSEA 339
               SS+         T+  P SS   +     +        S+A++SL S      + +
Sbjct: 155 ---TSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSS 211

Query: 338 NLSSVKTSNS 309
           +LSS   SNS
Sbjct: 212 SLSSTAASNS 221


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -2

Query: 206 AAVKATLGLAKEGEGVS--LALVLEGLAYILFVLVQGILG 93
           +  KA  GLAK   G++  +A  ++GLA+I+  L+  ILG
Sbjct: 149 SVAKANEGLAKAIAGLAKYVAKAIQGLAHIILSLLLFILG 188


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 301  VIREFEVFTELKLASETAY--ILGDNKEVVATDSQKNTVYLLAKKYGVKTPE 450
            V+ E + F +L+ A  + Y  I  +   V+  +   NT   LAKK  VK P+
Sbjct: 3042 VVIERKRFLQLQFAFWSLYNEIYSEKMNVIPLEQLMNTGSYLAKKIKVKNPD 3093


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 94  PKMPWTSTNRIYAKPSSTSANETPSPSLASPR--VALTAAED 213
           PK  + S  ++ ++PS+ +   T   +L+SPR    LT+A D
Sbjct: 368 PKKSFLSKFKLTSRPSTPNVGNTAPDALSSPRNDSPLTSAAD 409


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
 Frame = +1

Query: 241 HGYGKSSVKLLHVHRDEGHHVIREFEVFTELKLASETAYILGDNKEVVATDSQKNTVYLL 420
           HGYGK  ++  +      H      +  ++L L S  AY       +V     + T+  L
Sbjct: 331 HGYGKLLIQFSYELTKREHKHGSPEKPLSDLGLISYRAYWAEQIINLVLGMRTETTIDEL 390

Query: 421 AKKYGVKTPEEFGAVVVNHFLYMYK-QVLEAKCRVIEYPWERLQ 549
           A K  + T +    +   + L  YK Q +      IE  +ERL+
Sbjct: 391 ANKTSMTTNDVLHTLQALNMLKYYKGQFIICISDGIEQQYERLK 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,277
Number of Sequences: 5004
Number of extensions: 59095
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)