Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9g06
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1448 - 37434159-37434242,37434875-37434968,37435077-374352... 99 2e-21
01_01_0185 - 1570942-1571178,1571525-1571656,1571737-1571816,157... 30 1.5
06_01_0835 - 6315762-6316844 30 2.0
04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880 29 3.6
01_06_1412 - 37140654-37141088,37141549-37142214 29 3.6
11_01_0522 - 4103138-4103926 29 4.7
07_01_1002 + 8463187-8463585 28 6.2
06_03_0573 + 22407489-22408373,22408460-22408795 28 6.2
11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600 28 8.3
08_02_0563 - 18728901-18729014,18729094-18729324,18729358-187293... 28 8.3
06_03_0810 - 24817268-24817350,24817547-24817697,24818441-248185... 28 8.3
06_03_0158 - 17347451-17347864 28 8.3
04_04_1271 - 32282865-32283167,32283429-32283561,32283683-322839... 28 8.3
04_04_0045 + 22337089-22337385,22338437-22338715,22338728-223387... 28 8.3
>01_06_1448 -
37434159-37434242,37434875-37434968,37435077-37435250,
37435536-37435627,37435947-37436056,37437274-37437349,
37437445-37437537,37437617-37437817
Length = 307
Score = 99 bits (238), Expect = 2e-21
Identities = 61/157 (38%), Positives = 85/157 (54%), Gaps = 5/157 (3%)
Frame = +1
Query: 247 YGKSSVKLLHVHRDE---GHHVIREFEVFTELKLASETAYILGDNKEVVATDSQKNTVYL 417
+GKS V++ V R G HVI E+ V + +Y DN +VATDS KNTVY+
Sbjct: 11 HGKSRVRVSRVWRRPAAAGGHVIVEWNVAVSVVSDCLPSYTSDDNSAIVATDSIKNTVYV 70
Query: 418 LAKK-YGVKTPEEFGAVVVNHFLYMYKQVLEAKCRVIEYPWERLQA-GTPHSHAFVFSPI 591
AK+ + + EEF ++ HF +Y QV EA + E PWER+ G PHSH F +
Sbjct: 71 KAKECTEIVSMEEFAVILGRHFTSLYPQVSEATVTIAERPWERVVVDGKPHSHGFKLG-V 129
Query: 592 ATRWSEVSQTRHEAVVVKSGLSGLRVLKTTQSAFVDF 702
+EV + +++ SG+ G +LKTTQS F F
Sbjct: 130 EKHVTEVIVKKSGNLLINSGIQGYSLLKTTQSGFEKF 166
>01_01_0185 -
1570942-1571178,1571525-1571656,1571737-1571816,
1571919-1572048,1572136-1572268,1572376-1572497,
1572612-1572749,1572898-1572918,1573493-1573678,
1574576-1574713,1575068-1575532
Length = 593
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 535 WERLQAGTPHSHAFVFSPIATRWSEVSQTRHEAVVVKSGLSGLR 666
WERL + V S I T+WSE+S + A +K L LR
Sbjct: 471 WERLHPENVEASVVVLSTIVTKWSELSH-KLSAESLKVTLKNLR 513
>06_01_0835 - 6315762-6316844
Length = 360
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = -2
Query: 473 LTTTAPNSSGVFTPYFFASKYTVFFCESVATTSLLSPKMYAVSEANLSSVKTSNSLIT*C 294
+ + +P S+ TP F++S S TT+ S E+ +S + I
Sbjct: 32 IRSASPTSTSTSTPLFYSSSSI-----STTTTTPFSYSSPLPQESYYLPASSSYAAIVPP 86
Query: 293 PSSR*-TWRSLTELLPYPWSQSSNLPPESSAAV 198
P++ T S +EL P P S SS P ++AAV
Sbjct: 87 PTTTTNTTTSFSELPPLPPSSSSFASPANAAAV 119
>04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880
Length = 237
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 546 AGGDTSQPCFCFFTNRHAVVG 608
AGG +PC C+F R VVG
Sbjct: 6 AGGGGERPCMCYFHPREEVVG 26
>01_06_1412 - 37140654-37141088,37141549-37142214
Length = 366
Score = 29.1 bits (62), Expect = 3.6
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Frame = +1
Query: 94 PKMPWTSTNRIYAKPSSTSANETPSPSLAS-PRVALTAAEDSGGRFELCDHGYGKSSVKL 270
P W A SS S++ + S S+AS + + ED GG + DH G + + L
Sbjct: 10 PFFEWLKPPPRPASSSSWSSSFSSSSSMASRDQETVVPGEDGGGEIQE-DHKSGMTCLPL 68
Query: 271 LHVHRDEGHHVIREFEVFTELKLASETAYILGDNKEV 381
L + +EG+ E V E+ ++ A ++ E+
Sbjct: 69 LSM-LEEGNSKRHEHPVKEEIMSSAHAAGVVEPGVEL 104
>11_01_0522 - 4103138-4103926
Length = 262
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 37 HAAASSLFTHT*N*VNQIDPKMPWTSTNRIYA-KPSSTSANETPSPSLASPRVALTAAED 213
HA ++S + V+ + P + +T + A P TS +PSP SPR++ AA
Sbjct: 62 HARSASASAASAAVVSPVPPALAKVATRQQLALPPCMTSPRASPSPYYHSPRLSSAAACR 121
Query: 214 SGGRFELCDHGY 249
S C Y
Sbjct: 122 SAASASPCRSRY 133
>07_01_1002 + 8463187-8463585
Length = 132
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 94 PKMPWTSTNRIYAKPSSTSANETPSPSLASPRVALTAAEDS 216
P P T T ++ A P+ S++ +PSP AS + ++A ED+
Sbjct: 81 PSSP-TKTTQVCA-PAVASSDASPSPKTASSSMMVSAVEDA 119
>06_03_0573 + 22407489-22408373,22408460-22408795
Length = 406
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -1
Query: 600 PRGDW*KNKSMAVRCPRLQSLPGVLDNATFCFQHLL 493
PR +W +AV+C RL+ LPG+ + +F F LL
Sbjct: 375 PRKNW-----LAVQCQRLEHLPGINLSVSFHFGMLL 405
>11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600
Length = 447
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 91 DPKMPWTSTNRIYAKPSSTSANETPSPSLASPRVALTAAEDSGG 222
D PWTST R Y SST P ++ + A E+S G
Sbjct: 273 DGSEPWTSTRRRY-DTSSTGLRPPPLAAILTHNAIAIAGEESLG 315
>08_02_0563 -
18728901-18729014,18729094-18729324,18729358-18729376,
18729457-18729627,18731145-18731377
Length = 255
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 244 GYGKSSVKLLHVHRDEGHHVIREFEVFTELKLASETAYILGDNKEVVATDSQKN 405
GY + HVHR H + + V E L ++ A I+G K+ + K+
Sbjct: 73 GYAGKQLTWKHVHRKAPHVALLDPAVINETTLKNDRANIVGYIKDCLFAHQDKD 126
>06_03_0810 -
24817268-24817350,24817547-24817697,24818441-24818542,
24818722-24818802,24818900-24819020,24819284-24819401,
24819514-24819637,24819898-24819963,24820117-24820407,
24820455-24820592,24820967-24821116,24821240-24821410,
24821543-24821746,24821880-24822104,24822461-24822595,
24822995-24823096,24823586-24823882,24823979-24824167,
24824581-24824628,24824872-24825070,24825501-24825730,
24826373-24826568,24826695-24826882
Length = 1202
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 138 GLSVYSICACPRHFGVDLIHLILSVCKKRRRRCMN 34
GL+ ++ CA P +G+ +H L+ K RRR ++
Sbjct: 102 GLARFAPCALPHTYGLSSLHSGLTGAKIRRRHVLH 136
>06_03_0158 - 17347451-17347864
Length = 137
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 245 PWSQSSNLPPESSAAVKATLGLAKEGEGVS 156
PW ++ +LP ++A VKA A+ EG S
Sbjct: 48 PWRKALSLPAAATAKVKAAAAAARREEGDS 77
>04_04_1271 -
32282865-32283167,32283429-32283561,32283683-32283908,
32284058-32284274,32284398-32284558,32285309-32285449,
32285621-32286944
Length = 834
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/32 (34%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = +1
Query: 136 PSSTSA-NETPSPSLASPRVALTAAEDSGGRF 228
P++T+A + P+P+LA+P + L++ +++ G F
Sbjct: 495 PAATAAVHARPNPALAAPSINLSSVKEATGNF 526
>04_04_0045 +
22337089-22337385,22338437-22338715,22338728-22338798,
22338883-22338926,22340670-22340884,22340958-22341082,
22341142-22341220,22341278-22341367
Length = 399
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 103 PWTSTNRIYAKPSSTSANETPSPSLASPRVALTAAEDSGGRFEL 234
P S++ +A ++ P+PSLA P V + + G+ E+
Sbjct: 21 PAASSSPSFAAAAAVGVRGVPAPSLAGPAVWARSPREPAGKIEM 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,835,260
Number of Sequences: 37544
Number of extensions: 398920
Number of successful extensions: 1401
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -