Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9g04
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...   188   7e-49
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...   120   3e-28
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...   108   9e-25
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...   107   2e-24
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    96   4e-21
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    89   4e-19
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    80   3e-16
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    70   4e-13
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    50   2e-07
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     27   2.6  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   6.0  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   7.9  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   7.9  

>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score =  188 bits (458), Expect = 7e-49
 Identities = 102/183 (55%), Positives = 126/183 (68%)
 Frame = +1

Query: 103 VSLNPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVE 282
           +SLNP +I             R+SSF+GAIA+GDLVKSTLGPKGMDKIL S   +SG + 
Sbjct: 1   MSLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQS--NSSGDIV 58

Query: 283 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 462
           VTNDGATILKSI +DN AAK+LV++SKVQD+EVGDGTTSV V           ++  K+H
Sbjct: 59  VTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIH 118

Query: 463 PQTIIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKRAFH 642
           PQ II G+RIA+  A  AL  +S D+    + A  R DLENIARTTLSSKILS +K  F 
Sbjct: 119 PQVIIDGYRIATKTAIDALRASSIDNSS--DPAKFRSDLENIARTTLSSKILSQNKNHFA 176

Query: 643 KIS 651
           +++
Sbjct: 177 QLA 179


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score =  120 bits (288), Expect = 3e-28
 Identities = 65/158 (41%), Positives = 99/158 (62%)
 Frame = +1

Query: 166 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 345
           R  + +   AI ++VKS+LGP G+DK+LV    + G V VTNDGATIL  + V++PA K+
Sbjct: 23  RNQNVLATTAIANVVKSSLGPVGLDKMLVD---DIGDVTVTNDGATILSLLDVEHPAGKV 79

Query: 346 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 525
           LV++++ QD+EVGDGTTSV +          +L++ K+HP TII G+R+A   A + + +
Sbjct: 80  LVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTD 139

Query: 526 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKRAF 639
                  +L + S    L N+A+T++SSKI+ N    F
Sbjct: 140 VLSCSVDSLGKES----LINVAKTSMSSKIIGNDSDFF 173


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score =  108 bits (259), Expect = 9e-25
 Identities = 61/178 (34%), Positives = 97/178 (54%)
 Frame = +1

Query: 115 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 294
           P+ +LK            +S+    +A+ D +++TLGP G DK++V    + G+V ++ND
Sbjct: 9   PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVD---DRGEVVISND 65

Query: 295 GATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTI 474
           GATI+K + + +PAAK LVD+++ QD EVGDGTTSV V            +E  +    I
Sbjct: 66  GATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLI 125

Query: 475 IAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKRAFHKI 648
           I G+R A+  A   + E +  H    +E  LR  L   A T ++SK++ ++   F K+
Sbjct: 126 IRGYRKAAQLAVNKIKEIAI-HLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKM 182


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score =  107 bits (256), Expect = 2e-24
 Identities = 61/162 (37%), Positives = 97/162 (59%)
 Frame = +1

Query: 166 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 345
           R+S+ + A ++ D ++++LGPKGMDK ++  G+  G+V +TNDGATILK + V +PAAK+
Sbjct: 21  RLSNIMAARSVADAIRTSLGPKGMDK-MIQTGK--GEVILTNDGATILKHLSVLHPAAKM 77

Query: 346 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 525
           LVD+S  QD E GDGTTSV +          KL+++ +HP  I   ++ A+      + E
Sbjct: 78  LVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKE 137

Query: 526 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKRAFHKIS 651
            +   + +  E+ LR      A T+L+SKI+S +      I+
Sbjct: 138 NALAIELSDRESLLRA-----ATTSLNSKIVSQYSNLLAPIA 174


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 96.3 bits (229), Expect = 4e-21
 Identities = 59/160 (36%), Positives = 91/160 (56%)
 Frame = +1

Query: 172 SSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILV 351
           S  +    + ++V+++LGP+G+DKIL+S     G++ VTNDGATIL  + V++  AK+LV
Sbjct: 38  SHILATKTVANIVRTSLGPRGLDKILIS---PDGEITVTNDGATILDQMEVEHQIAKLLV 94

Query: 352 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEAS 531
            +SK QD+E+GDGTT V V           LI++ +HP  I  G+  A   A + L +A 
Sbjct: 95  QLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHL-DAI 153

Query: 532 FDHQKNLNEASLRVDLENIARTTLSSKILSNHKRAFHKIS 651
            D      E +   +L   A+T+L SK++S     F  I+
Sbjct: 154 SDVVDFSPENT--TNLFRSAKTSLGSKVVSKAHDHFANIA 191


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 89.4 bits (212), Expect = 4e-19
 Identities = 50/170 (29%), Positives = 95/170 (55%)
 Frame = +1

Query: 112 NPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTN 291
           +P+ ++            +MS+   A A+ D++++ LGP+ M K+L+      G V +TN
Sbjct: 3   SPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLD---PVGSVLLTN 59

Query: 292 DGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQT 471
           DG  IL+ I V +PAAK ++++++ QDEEVGDGTTSV +           L+++K+HP  
Sbjct: 60  DGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVV 119

Query: 472 IIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILS 621
           +I  ++ A + A   + E +     N+++     ++  + RT + +K+++
Sbjct: 120 MIRSFKQALEDALSIIDEITL--PVNVDD---NAEMFRLIRTCIGTKLVA 164


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 49/145 (33%), Positives = 74/145 (51%)
 Frame = +1

Query: 187 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKV 366
           AI + D++KS LGP G  K+LV     +G +++T DG  +L  + + NP A  +   +  
Sbjct: 25  AIGLQDVLKSNLGPTGTTKMLVD---GAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATA 81

Query: 367 QDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQK 546
           QD+  GDGTTSV +            I + LHP  I  G+ +A + A   L     D + 
Sbjct: 82  QDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFEV 141

Query: 547 NLNEASLRVDLENIARTTLSSKILS 621
           +      R  L N+A+T+LS+KI S
Sbjct: 142 D------REVLLNVAKTSLSTKISS 160


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 43/143 (30%), Positives = 71/143 (49%)
 Frame = +1

Query: 196 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDE 375
           + ++ +++LGP G +KI+V+   +  Q  +TND ATI++ + V +PAAK++VD ++ Q+ 
Sbjct: 38  LSEITRTSLGPNGKNKIVVN---HLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQEN 94

Query: 376 EVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNLN 555
           E+GD    V V           +I   L P  I  G+ +A     + L E   D    + 
Sbjct: 95  ELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICAD---KIE 151

Query: 556 EASLRVDLENIARTTLSSKILSN 624
                 +L    RT +SSK   N
Sbjct: 152 TVESEKELIKAIRTCISSKQYGN 174


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
 Frame = +1

Query: 166 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGV----DNP 333
           R S   G   +   V  TLGPKG + ++    +  G  ++T DG T+ +S+ +    +N 
Sbjct: 44  RASLLTGVDTLARAVSVTLGPKGRNVLI---DQPFGSPKITKDGVTVARSVSLKDKFENL 100

Query: 334 AAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 501
            A+++ D++   +E  GDGTT+ TV          + +    +P  +  G ++A D
Sbjct: 101 GARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVD 156


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 175 WTSGQLQLSPLLLHF*G 125
           WT GQL LSP +L+F G
Sbjct: 311 WTQGQLWLSPRVLYFLG 327


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = +1

Query: 190 IAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQ 369
           IA+ D+  S LG  G+        RN G  +   DG T LKS+GV +   K+      VQ
Sbjct: 324 IAVPDV--SQLGIPGVKPEAYRDSRNFGGRDA--DGVTGLKSLGVRDLTYKLSFLACMVQ 379

Query: 370 DEEVGD 387
            ++  D
Sbjct: 380 PDDAND 385


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +1

Query: 196 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSI 318
           +G++    LGP     I+ +CG    ++ V+   A + + I
Sbjct: 757 VGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQI 797


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 320 PIDFNIVAPSFVTST*PEFLPQETKILSIP 231
           P+D ++ +P   TST PE LP+E    S+P
Sbjct: 408 PLDGDVESPH-PTSTMPEALPREPLSFSLP 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,005
Number of Sequences: 5004
Number of extensions: 48131
Number of successful extensions: 126
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)