Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9f24
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   4.0  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.0  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.0  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   9.2  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   9.2  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   9.2  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   9.2  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   9.2  

>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
 Frame = +2

Query: 317 YTLASFLAIFVVSTTQLIVTNGFLQGLGMGLLIPVSY--TSFNSYFTKKKVLYLS 475
           YT+  F+A+  V +  + + NG+ + LG G+++ + +  TS  +YF+  +VL+ S
Sbjct: 33  YTVWVFIALICVDSN-IKIRNGY-RNLGGGIVLIIFFFITSGLAYFSYFRVLFSS 85


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
 Frame = +2

Query: 320 TLASFLAIFVVSTTQLIVTNGFLQGLGMGLLIPVSYTSFNSYFTKKKVLYLSLCKA---- 487
           + A FLA  +    Q  +    LQG+GM  L  +     +SYF ++  +  S+       
Sbjct: 566 SFAHFLANRLPHQAQFFIDLIVLQGIGMFPLKLIQLGKLSSYFVRRSFVPYSIASKKFET 625

Query: 488 ----SIGLITMLYPLFIKFTITQYGFRGTLAIICAISAHSIFGALV 613
               S+G I +  P+FI      Y     L ++  +  + I G LV
Sbjct: 626 PDSFSVG-IFLPQPMFIMLICLCYSIISPLILVFGL-IYFIIGFLV 669


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +2

Query: 338 AIFVVSTTQLIVTN------GFLQGLGMGLLIPVSYTSFNSYFTKKK 460
           A+F +ST+++I+ N      G  QG  M LL  V   +   +  KK+
Sbjct: 113 ALFSISTSEVIIVNMWENQVGLYQGSNMALLKTVLEVNLQLFHNKKE 159


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 604 SENTVS*YGTNNR*SPSKPVLGYRKFYKQRVQH 506
           SE++VS    +   SP++P+LG R  +++   H
Sbjct: 202 SESSVSFNRLSRNHSPTRPLLGNRDLFRRSSNH 234


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 254 SANIALKSLSLRQVGLIGAFIYTLASFLAIF 346
           S  I L S +  + G++GA  +TL +  AIF
Sbjct: 643 SIGITLFSFAKTRSGILGAASFTLVALFAIF 673


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 21 VWLKKSVVKKRSTN*FLPKEA 83
          +W+ KSV  +RST  FL K +
Sbjct: 11 IWILKSVQSRRSTKGFLQKHS 31


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 110 IIPHRQRSPSLLREELIRTS 51
           I+PH QR+P +  E+L+  S
Sbjct: 243 IVPHAQRAPQMQGEKLLEIS 262


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
 Frame = +2

Query: 239 AIAGFSANIALKSLSLRQVGLIGAFIYTLASFLAIF--VVSTTQLIVTNG-------FLQ 391
           A+ G   ++  KS+   Q+G+   FI  + SFL  F  ++S    +V+ G       F+Q
Sbjct: 120 AVVGIYCSVVHKSIL--QIGVTLTFICPMLSFLLCFRIIISQKAALVSIGISTLYYCFVQ 177

Query: 392 GLGMGLLIPVSYTSFNSYFTKKKVLYLSLCKASIGLITMLYPLFIKFTITQYGFRG 559
            + +   + +SY      F    +  L L ++ I +I      FI F   +  FRG
Sbjct: 178 FMEVKSAL-ISYDRSLFKFYPIDLFVLLLSQSFICIIAFGVSDFINFQKEERNFRG 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,261
Number of Sequences: 5004
Number of extensions: 51015
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)