Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9f24
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395...    30   1.3  
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914...    29   2.4  
05_06_0156 - 26031463-26031572,26031961-26032039,26032133-260322...    29   2.4  
05_05_0275 - 23762905-23762995,23763775-23763841,23763925-237639...    28   5.4  
10_07_0114 + 13005620-13005976                                         28   7.2  
07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950...    28   7.2  
02_05_0550 + 29904733-29905596                                         27   9.5  

>12_02_0065 -
           13109652-13110746,13110843-13111762,13139462-13139528,
           13139607-13139675,13139877-13140020,13140100-13140171,
           13140316-13140387,13140466-13140558,13140655-13140726,
           13140809-13140925
          Length = 906

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 277 SFIKTSRSYRCLYIHTSIIPSNICSIHNSVNCHKRIPTGPRN-GSTNSGVVY 429
           SF+    SY  ++++   IP         + CH R+P G RN G+T + +VY
Sbjct: 490 SFLDAYSSYHQIHMNPPDIPKTAFITLLGIFCHLRMPFGLRNAGATFARLVY 541


>05_07_0004 +
           26990250-26990516,26990877-26990931,26991286-26991461,
           26991702-26991923,26992001-26992239,26992437-26992962,
           26993042-26993315,26993391-26994009,26994082-26994121,
           26994263-26994310,26994548-26994814,26994892-26995155,
           26995260-26995904
          Length = 1213

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 371 VTNGFLQGLGMGLLIPVSYTSFNSYFTKKKVLYLSLCKASIGLITMLYPLFI 526
           V  GF+QG GMG L  + ++SF         L LS   +   ++ +L+ + I
Sbjct: 266 VKEGFIQGFGMGFLNLIYFSSFGLIVWYGSKLSLSRGYSGADIMNILFGIMI 317


>05_06_0156 -
           26031463-26031572,26031961-26032039,26032133-26032261,
           26032362-26032559,26032741-26032900,26032980-26033147,
           26033290-26033405,26033491-26033586,26033675-26034058,
           26035150-26035572,26037202-26037315,26037969-26038017,
           26038103-26038262,26038345-26039014
          Length = 951

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 425 YTSFNSYFTKKKVLYLSLCKASIGL--ITMLYPLFIKFTITQYGFRGTL 565
           Y     YF + K  YL+L K   G+  + ML  + I FT+    FR +L
Sbjct: 505 YAPLGKYFGETKPTYLTLVKGVEGITGVIMLVCMIIAFTLATRWFRRSL 553


>05_05_0275 -
           23762905-23762995,23763775-23763841,23763925-23763976,
           23764966-23765124
          Length = 122

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 80  GWGYVVCVGLSVIFIAGTAHQ 142
           GWG VV   L+ + +AGT H+
Sbjct: 67  GWGAVVVAELTALIVAGTVHR 87


>10_07_0114 + 13005620-13005976
          Length = 118

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 245 AGFSANIALKSLSLRQVGLIGAFIYTLASFLAIFVVSTTQ 364
           AG++    + S  ++QVG     +Y LA  ++++ VST+Q
Sbjct: 26  AGYTTAEDVSSDFIKQVGKFAVTVYKLARGVSLYYVSTSQ 65


>07_03_1342 -
           25891761-25892102,25892588-25893135,25893342-25895012,
           25895818-25896745
          Length = 1162

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 293 VGLIGAFIYTLASFLAIFVVSTTQLIVTNGF 385
           VG IGA +  +   LAI+VV + +L   NGF
Sbjct: 607 VGCIGAALLVIFIALAIYVVRSQELCGRNGF 637


>02_05_0550 + 29904733-29905596
          Length = 287

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +2

Query: 539 TQYGFRGTLAIICAISAHSIFGALVMHPVQW 631
           T   FRG  A +CA +A SI GA  MH   W
Sbjct: 198 TPEAFRGVAAAMCAAAAESIRGA-GMHLPPW 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,246,856
Number of Sequences: 37544
Number of extensions: 291879
Number of successful extensions: 654
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)