Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9f23
         (219 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    23   4.1  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    23   4.1  
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces...    23   5.5  
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc...    23   5.5  
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    23   5.5  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    23   7.2  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    22   9.6  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    22   9.6  

>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 198 LFHKSYKQSGQSIIKFKLNRLKNNVVQSCTCFRGNKPYNKSLKL 67
           LF  S+     +    +L +  + ++ SC+CF  N P   ++ L
Sbjct: 510 LFETSFAIKASAFQNPQLLKTCSQLLSSCSCFLQNHPQYLNISL 553


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 177 QSGQSIIKFKLNRLKNNVVQSCTCFRGNKPYNKSLKLI 64
           +S  S+IK +++ LKN    +   +RG+   N SL +I
Sbjct: 47  KSDLSVIKMEIDLLKNLDHPNIVKYRGSYQTNDSLCII 84


>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 338

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 108 CFRGNKPYNKSLKLIN 61
           CF G +PY  S +L++
Sbjct: 196 CFHGEQPYQSSKRLLD 211


>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 300

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 204 YYLFHKSYKQSGQSIIKFKLN 142
           Y +  + YK SGQ I+K  LN
Sbjct: 83  YKIVQRIYKYSGQPIVKDFLN 103


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 144 NRLKNNVVQSCTCFRGNKPYNKSLK 70
           + L +N++   T F G+  YN+S+K
Sbjct: 160 SELADNLIMPSTQFHGSFIYNQSIK 184


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 98  PLKQVHDCTTLFLRRFS 148
           PLK  H CT  FLR+F+
Sbjct: 84  PLK--HSCTPSFLRKFN 98


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 101 LKQVHDCTTLFLRR 142
           +K +HDC  LF+++
Sbjct: 77  MKHLHDCEALFIKQ 90


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -1

Query: 204 YYLFHKSYKQSGQSIIKFKLNRLKNNVVQSCTCFRGNKPYNKSLKLI 64
           +YL +K   +  Q +++     L N V++     +  KP+N   +L+
Sbjct: 57  WYLIYKHTCRCFQQVVRIVYWFLGNQVIRENFSIKKRKPHNHIPQLL 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,140
Number of Sequences: 5004
Number of extensions: 9679
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)