Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9f23
         (219 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine re...    30   0.26 
U23510-13|AAK71392.2|  425|Caenorhabditis elegans Hypothetical p...    26   4.2  

>AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine
           receptor, class h protein270 protein.
          Length = 358

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 198 LFHKSYKQSGQSIIKFKLNRLKNNVVQSCTCFRGNKPYNKSLKLIN 61
           L HKSY++    ++KF +   KNN V S    R +   ++  K+ N
Sbjct: 296 LIHKSYRKVVWDLLKFDIFTRKNNQVSSFVVSRNSVAIDRRKKIEN 341


>U23510-13|AAK71392.2|  425|Caenorhabditis elegans Hypothetical
           protein R12C12.8a protein.
          Length = 425

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = -1

Query: 207 IYYLFHKSYKQSGQSIIKFKLNRLKNN---VVQSCTCFRGNKPYNKSLKLIN*KA*FIPV 37
           +Y L +   K S  + + F     +N+   VVQ C+CF G+    K+ K    K+  IP+
Sbjct: 96  LYLLENLFVKNSCNNSVNFCYRSCQNDLPIVVQGCSCFEGSYSRIKNYKEAQKKS-LIPI 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,810,444
Number of Sequences: 27780
Number of extensions: 52419
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)