Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9f19
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    75   1e-14
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.6  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   2.6  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    27   2.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   3.4  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    27   3.4  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    26   5.9  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    25   7.8  

>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 33/76 (43%), Positives = 50/76 (65%)
 Frame = +3

Query: 462 YEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDE 641
           YE QL  L+ QSFNMEQA   T++LK+T  T+  M++   Q+K + K ++I+ I+ + DE
Sbjct: 75  YESQLQQLQQQSFNMEQAAMTTESLKNTMATVQTMQETARQLKSQSKNVSIEKIEKLQDE 134

Query: 642 LADMMEQADEVQEALG 689
           + D M+ A E+ E LG
Sbjct: 135 IQDYMDAAGELNEVLG 150



 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 20/49 (40%), Positives = 37/49 (75%)
 Frame = +1

Query: 205 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMF 351
           R+D++E K+ KLD +L  ++ +++  R GP + ++KQ+AM VL+QKK++
Sbjct: 27  RSDSVEVKIAKLDAQLSVFQQKIANTRPGPGQTALKQRAMNVLRQKKIY 75



 Score = 30.3 bits (65), Expect = 0.27
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 131 MNRLFGRAKPKEPGPSITDCIKNM 202
           M+RLFGR  P +P  S+TD I ++
Sbjct: 1   MHRLFGRKPPTQPTASLTDAIDSL 24


>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 73

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 431 FCVVIYRLP*-GNEFEFTL*SLHIKKSTNIFFCFN 330
           +CV IYRL      F+ +  SLH+ KS +I  C N
Sbjct: 26  YCVSIYRLEECSGRFKPSSYSLHLLKSLSIIICEN 60


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +1

Query: 211 DNIEQKVQKLDTELR---KYKDQMSKMREGPAKNSVKQ 315
           DN+E+K+++L  E+R   + KD+ SK R   A+   +Q
Sbjct: 417 DNLERKLRQLRVEIRALEREKDEASKERLKAARKEAEQ 454


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 539 GHSYHNICNEGWC 577
           GH +HN C E WC
Sbjct: 57  GHYFHNHCLESWC 69


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 98   FTEFSKRFKPNMNRLFGRAKPKEPGPSITDCIKNMAEPIILNRKSRNWTQNLE 256
            F + S++    M  L    +  E    +T   +NMA  ++L  KS NW + +E
Sbjct: 963  FNQISQKTDSTMEELVELIERGEK-IGLTSDNENMATALLLKEKSENWMKQVE 1014


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 211 DNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKK 345
           D IEQ +      ++K KD +  + + PA+ ++   A +V+ +KK
Sbjct: 334 DAIEQTITWAKEYIKKAKDSLLCLPDSPARKALFALADKVITRKK 378


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 483 LRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDE-LADMME 659
           L  +   +E+AN   +  +   +    +++   + KK+ KK+N DS DD+  +   +++ 
Sbjct: 50  LTKKDVEVEEANGVEEAAETIESDTKEVQNIKPKSKKKKKKLN-DSSDDIEGKYFEELLA 108

Query: 660 QADEVQE 680
           + DE ++
Sbjct: 109 EEDEEKD 115


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 663 LVPSYQLTHHLHHQWNQY*SS*ILFSFVLHHPSLQIL 553
           L P   +  H+H Q+N +    +L+S VL  P   +L
Sbjct: 140 LSPGLLIIDHIHFQYNGFLFGLLLWSIVLAKPEKNML 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,336
Number of Sequences: 5004
Number of extensions: 55173
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)