Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9f19
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0022 - 170045-170095,170406-170554,170764-170875,171398-17... 68 6e-12
05_01_0020 + 143273-143592,144278-144371,144466-144537,144675-14... 68 8e-12
06_03_0717 + 23834965-23835051,23836760-23836859,23837685-238377... 49 4e-06
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504... 48 9e-06
02_04_0469 - 23178589-23178755,23179529-23179697,23179836-231799... 35 0.070
06_03_0122 + 16889189-16889381,16890120-16890331 31 1.1
05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760 30 1.5
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478... 29 2.6
01_07_0014 - 40455673-40455723,40455815-40455892,40455987-404560... 29 2.6
01_04_0019 - 15134494-15135863,15135966-15136083,15136226-151362... 29 4.6
03_02_1027 + 13422698-13422914,13424899-13424959,13425366-134254... 28 6.1
01_02_0129 + 11410345-11410487,11410908-11411014,11414512-114147... 28 8.0
>01_01_0022 -
170045-170095,170406-170554,170764-170875,171398-171469,
171578-171671,171770-171921,172004-172072
Length = 232
Score = 68.1 bits (159), Expect = 6e-12
Identities = 29/76 (38%), Positives = 51/76 (67%)
Frame = +3
Query: 462 YEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDE 641
YE+Q + L Q++N++Q +A LKD T++AMK ++K K + I+ ID++ DE
Sbjct: 75 YEEQRNMLYNQTYNLDQVAFAADGLKDAQQTMNAMKAANKELKGMMKTVKIEDIDNMQDE 134
Query: 642 LADMMEQADEVQEALG 689
+ D+M+ ++E+QE+LG
Sbjct: 135 MTDLMDVSNEIQESLG 150
Score = 57.6 bits (133), Expect = 9e-09
Identities = 21/49 (42%), Positives = 40/49 (81%)
Frame = +1
Query: 205 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMF 351
R ++++ K++KLD EL +YK+Q+ K R GP+++++K +A+R+LK K+M+
Sbjct: 27 RGESVDDKIKKLDEELGRYKEQIRKTRPGPSQDAIKARAIRLLKHKRMY 75
>05_01_0020 +
143273-143592,144278-144371,144466-144537,144675-144786,
145179-145327,145484-145510,145931-145981
Length = 274
Score = 67.7 bits (158), Expect = 8e-12
Identities = 29/76 (38%), Positives = 50/76 (65%)
Frame = +3
Query: 462 YEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDE 641
YE Q D L Q++N++Q +A++ LKD T++AMK ++K K + ++ ID + DE
Sbjct: 108 YEGQRDMLYNQTYNLDQVAFASEGLKDAQQTMTAMKAANKELKGMMKTVKLEDIDSLQDE 167
Query: 642 LADMMEQADEVQEALG 689
+ D+M+ ++E+QE LG
Sbjct: 168 MMDLMDVSNEIQETLG 183
Score = 66.5 bits (155), Expect = 2e-11
Identities = 26/49 (53%), Positives = 40/49 (81%)
Frame = +1
Query: 205 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMF 351
R D+++ K++KLD EL +YKDQ+ K R GPA+ ++K +AMRVLKQ++M+
Sbjct: 60 RGDSVDDKIKKLDAELARYKDQIKKTRPGPAQEAIKARAMRVLKQRRMY 108
>06_03_0717 +
23834965-23835051,23836760-23836859,23837685-23837770,
23837867-23837958,23838659-23838773,23838847-23839029
Length = 220
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = +3
Query: 462 YEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDE 641
YEQQ++ L + + K T T+ A++ G + MK K NID +D DE
Sbjct: 74 YEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMHKATNIDDVDKTMDE 133
Query: 642 LADMMEQADEVQEAL 686
+ D ME ++Q+ L
Sbjct: 134 INDNMENMRQIQDLL 148
>09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,
5043954-5044058,5044726-5044791,5044882-5044999,
5045018-5045103,5045900-5046424,5046534-5047115,
5047203-5047385,5049326-5049392,5049685-5049791,
5049977-5050076,5050228-5050313,5050394-5050485,
5050591-5050705,5050792-5050983
Length = 984
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = +3
Query: 462 YEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDE 641
YEQQ++ L + + K T T+ A++ G MK K NID +D DE
Sbjct: 835 YEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAAAMKAMQKATNIDDVDKTMDE 894
Query: 642 LADMMEQADEVQEAL 686
+ + E ++Q+AL
Sbjct: 895 INEQTENMKQIQDAL 909
>02_04_0469 -
23178589-23178755,23179529-23179697,23179836-23179919,
23180495-23180647,23180798-23180950,23182488-23182589
Length = 275
Score = 34.7 bits (76), Expect = 0.070
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +3
Query: 465 EQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDEL 644
E+ L + N+EQ + ++K G +K +INID + + D+
Sbjct: 69 EELLKQVDTWQMNVEQQLSDIELASKQKAVFDSLKAGNAALKSIQNEINIDDVQKLMDDT 128
Query: 645 ADMMEQADEVQEALG 689
A+ DE+ ALG
Sbjct: 129 AEAKAYQDEINAALG 143
>06_03_0122 + 16889189-16889381,16890120-16890331
Length = 134
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 161 KEPGPSITDCIKNMAEPIILNRKSRNWTQNLENTRIR 271
+ PGP T + +A ++L R W + +NTRI+
Sbjct: 37 RSPGPVYTKMVAQVAYVLVLGRSLYGWKDSPKNTRIK 73
>05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760
Length = 112
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 125 PNMNRLFGRAKPKEPGPSITDCIKNMA 205
PN+N LFGR PG S + KNMA
Sbjct: 39 PNLNGLFGRQSGTTPGYSYSTANKNMA 65
>02_05_0890 -
32546918-32547088,32547224-32547334,32547705-32547884,
32547960-32548064,32548333-32548431,32548524-32548679,
32548772-32548850,32549213-32549278,32549382-32549536,
32549675-32550034,32550150-32550305,32550779-32550856,
32551471-32551812
Length = 685
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 71 NLQILLAFLHTRRRQKINNL 12
N+QILL FLH R+QK+ L
Sbjct: 171 NMQILLVFLHCLRKQKLEEL 190
>01_07_0014 -
40455673-40455723,40455815-40455892,40455987-40456049,
40456250-40456390,40456851-40456949,40457403-40457477,
40457556-40457652,40457738-40457805,40458456-40458512,
40458613-40458671,40458798-40458921,40459208-40459264,
40459378-40459457,40459585-40459793,40459868-40459986
Length = 458
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 570 DGVTQMKKEFKKINIDSIDDVNDELADM-MEQADEVQEAL 686
D V Q K K + ++DDV DEL ++ M+ DE +E L
Sbjct: 72 DEVAQAKAAAKALAKGAVDDVADELKELNMDNYDEEEEGL 111
>01_04_0019 -
15134494-15135863,15135966-15136083,15136226-15136278,
15136293-15137271,15138980-15139054
Length = 864
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 548 MSVLQCLRCIICLFHVERLGTEIIKLLFIPLV 453
+ +L C ++CLF V+ GT + LF P+V
Sbjct: 244 VEILSCT-VLVCLFMVQHWGTHRVAFLFAPVV 274
>03_02_1027 +
13422698-13422914,13424899-13424959,13425366-13425464,
13428959-13429361
Length = 259
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 226 KVQKLDTELRKYKDQMSKMREGPAKNSV 309
KV +L+TEL +D + KM+E A N V
Sbjct: 215 KVAQLETELEVARDDLQKMKEIVASNDV 242
>01_02_0129 +
11410345-11410487,11410908-11411014,11414512-11414786,
11415014-11415179,11415681-11415922,11417046-11417141,
11417574-11417761,11418573-11418789
Length = 477
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +1
Query: 217 IEQKVQKLDTELRKYKDQMSKMREGP 294
+ +KV+K+D E+ K+ + +++RE P
Sbjct: 169 LARKVKKIDNEIEKHMELFTQLRENP 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,280,737
Number of Sequences: 37544
Number of extensions: 310628
Number of successful extensions: 919
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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