Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9f19
         (689 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         25   1.7  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   3.0  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    24   3.9  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         24   5.2  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         24   5.2  
AJ618920-1|CAF01999.1|  204|Anopheles gambiae putative odorant-b...    23   6.9  

>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 645 LTHHLHHQWNQY*SS*ILFSFVLHHPSLQILWYECPSMSALHN 517
           L HH HH  + +          +HHP+   L Y+  + +A+H+
Sbjct: 116 LNHHQHHHQHPHLPHVQQHHPSVHHPAHHPLHYQPAAAAAMHH 158


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 226 KVQKLDTELRKYK-DQMSKMREGPAKNSVKQKAMRVLKQKK 345
           K+   + E ++ K DQ+SK +E       K++A  VLK+KK
Sbjct: 237 KLYHNEKEAKRLKEDQISKQQELNIIEKRKEEADEVLKEKK 277


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 145 WKSETQRTWPQHYGLH*KHGRADNIEQKVQK--LDTELRKYKDQMSKMREGPAKNSVKQK 318
           W SE  R     YG+  +  RA   EQ+ ++  + ++ R    Q  K+ +   K  + ++
Sbjct: 290 WTSEIDRLRSHFYGMQRRFNRARTEEQREERRQIKSDARAALQQAIKLSKDQHKQDLPEQ 349


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 669 HQLVPSYQLTHHLHHQ 622
           HQ    +QL HH HHQ
Sbjct: 95  HQHPHHHQLPHHPHHQ 110


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 669 HQLVPSYQLTHHLHHQ 622
           HQ    +QL HH HHQ
Sbjct: 95  HQHPHHHQLPHHPHHQ 110


>AJ618920-1|CAF01999.1|  204|Anopheles gambiae putative
           odorant-binding protein OBPjj4 protein.
          Length = 204

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 549 TTISAMKDGVTQMKKEFKK 605
           T +   KDG TQ+K + KK
Sbjct: 168 TNVWTQKDGCTQLKDKIKK 186


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,782
Number of Sequences: 2352
Number of extensions: 13374
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69831885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)