Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9f19
(689 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical ... 90 1e-18
U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical pr... 44 1e-04
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 33 0.19
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 33 0.19
Z81484-5|CAB03972.2| 293|Caenorhabditis elegans Hypothetical pr... 31 0.59
Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical pr... 31 0.59
AL110485-7|CAB60355.1| 237|Caenorhabditis elegans Hypothetical ... 31 0.59
U41528-2|AAK39168.1| 125|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 29 3.1
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 29 3.1
Z50872-2|CAA90755.1| 273|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z54342-12|CAA91145.2| 758|Caenorhabditis elegans Hypothetical p... 28 7.2
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical... 28 7.2
AL031630-18|CAA21002.1| 278|Caenorhabditis elegans Hypothetical... 28 7.2
AL021492-4|CAA16384.1| 492|Caenorhabditis elegans Hypothetical ... 28 7.2
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 27 9.6
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 27 9.6
U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 27 9.6
U64855-1|AAB04980.1| 594|Caenorhabditis elegans Hypothetical pr... 27 9.6
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 27 9.6
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 27 9.6
AC006673-11|AAF39920.1| 311|Caenorhabditis elegans Hypothetical... 27 9.6
>AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical
protein F41E6.9 protein.
Length = 217
Score = 90.2 bits (214), Expect = 1e-18
Identities = 37/75 (49%), Positives = 57/75 (76%)
Frame = +3
Query: 462 YEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDE 641
YE Q L Q+FNM+Q+N+A Q +KD T++AMKDG+ M+KE+KK+NID I+D+ D+
Sbjct: 74 YENQKGQLDQQAFNMDQSNFAIQGMKDNQVTVAAMKDGLKTMQKEYKKMNIDQIEDLQDQ 133
Query: 642 LADMMEQADEVQEAL 686
+ DM++ +E+QEA+
Sbjct: 134 MEDMLDMNNEIQEAM 148
Score = 77.8 bits (183), Expect = 7e-15
Identities = 33/49 (67%), Positives = 45/49 (91%)
Frame = +1
Query: 205 RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMF 351
R+D+I++K+QKLD +L K +DQMSKMREGP+KN +KQKA+RVLKQK+M+
Sbjct: 26 RSDSIDKKIQKLDQDLMKLRDQMSKMREGPSKNLIKQKALRVLKQKRMY 74
>U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical
protein R12C12.5 protein.
Length = 236
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = +3
Query: 462 YEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDE 641
YEQ+L + +E A + + + I + +KKE K++ID + D+ DE
Sbjct: 89 YEQELSRIDGVLTKLEAQRTALENVGMHNEVIDVLGKTTETLKKEHAKMDIDKVHDLMDE 148
Query: 642 LADMMEQADEVQEAL 686
+AD + ++E+ EA+
Sbjct: 149 IADGLAMSEELNEAI 163
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +3
Query: 420 DNTERSLRRHLN*WYEQQLDNLRAQ-SFNMEQANYATQTLKDTHTTISAMKDGVTQMKKE 596
D+ + R + WY+ ++ + Q S N + NYA + +K TT+ M+ + + E
Sbjct: 289 DHVSNTTRTDIESWYKLKVQEIHTQNSRNCLEQNYAREEVKRLRTTLGDMRGKMADL--E 346
Query: 597 FKKINID-SIDDVNDELADMMEQADE 671
+ + ++ I+D+N ++ + M ++
Sbjct: 347 GRNLLLEKQIEDLNYQMEEDMRSYEQ 372
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +3
Query: 420 DNTERSLRRHLN*WYEQQLDNLRAQ-SFNMEQANYATQTLKDTHTTISAMKDGVTQMKKE 596
D+ + R + WY+ ++ + Q S N + NYA + +K TT+ M+ + + E
Sbjct: 272 DHVSNTTRTDIESWYKLKVQEIHTQNSRNCLEQNYAREEVKRLRTTLGDMRGKMADL--E 329
Query: 597 FKKINID-SIDDVNDELADMMEQADE 671
+ + ++ I+D+N ++ + M ++
Sbjct: 330 GRNLLLEKQIEDLNYQMEEDMRSYEQ 355
>Z81484-5|CAB03972.2| 293|Caenorhabditis elegans Hypothetical
protein C47A10.8 protein.
Length = 293
Score = 31.5 bits (68), Expect = 0.59
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = -3
Query: 342 LLFQYSHCFLLD*IFSRTLPHFAHLILVFSKFCVQFLDF----LFNIIGSAMFLMQSVML 175
+ QYSH + + + H +HL+ ++FC F F LF+ IG+ + ++Q++ +
Sbjct: 71 IFIQYSHILGASAMAAYEISHLSHLLTALNRFCAVFFPFYYEKLFSKIGT-IIMIQAIWI 129
>Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical
protein R10E11.5 protein.
Length = 444
Score = 31.5 bits (68), Expect = 0.59
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 552 TISAMKDGVTQMKKEFKKINIDSIDDVNDELADMMEQADEVQEALG 689
T+ +K V ++KK+ +K + +DD+ EL + +E + +G
Sbjct: 320 TVKNIKSNVNEVKKDVEKNIAEKVDDITKELEKSAKSLEETTDKIG 365
>AL110485-7|CAB60355.1| 237|Caenorhabditis elegans Hypothetical
protein Y46G5A.12 protein.
Length = 237
Score = 31.5 bits (68), Expect = 0.59
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +3
Query: 501 NMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDELADMMEQADEVQE 680
N++ + QTLK SAMK M+ +++N+ I + E E D +E
Sbjct: 82 NIQAVSLKVQTLKSQDAMASAMKGVTKAMQSMNRQLNLPQIQKIMMEFEKQSEIMDMKEE 141
Query: 681 ALG 689
+G
Sbjct: 142 VMG 144
>U41528-2|AAK39168.1| 125|Caenorhabditis elegans Hypothetical
protein C15C7.5 protein.
Length = 125
Score = 31.1 bits (67), Expect = 0.78
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 202 GRADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKK 345
G ++++KLDT+L D MSKM E + + M LKQ+K
Sbjct: 37 GEVTEETEEIRKLDTQLDHLNDYMSKMEE--RLKAHNDRMMETLKQQK 82
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
T10G3.5b protein.
Length = 1203
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 492 QSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKIN---IDSIDDVNDELADMMEQ 662
QS E+ + +++ TTI+ M TQ + F + I+D +E+ +ME+
Sbjct: 957 QSQKQEELEKLQKEIQEKETTIARMTSSKTQFEAMFADVQQTLSKEINDKTEEIERLMER 1016
Query: 663 ADEVQE 680
D +++
Sbjct: 1017 IDSLEK 1022
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
T10G3.5a protein.
Length = 1205
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 492 QSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKIN---IDSIDDVNDELADMMEQ 662
QS E+ + +++ TTI+ M TQ + F + I+D +E+ +ME+
Sbjct: 959 QSQKQEELEKLQKEIQEKETTIARMTSSKTQFEAMFADVQQTLSKEINDKTEEIERLMER 1018
Query: 663 ADEVQE 680
D +++
Sbjct: 1019 IDSLEK 1024
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 492 QSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKIN---IDSIDDVNDELADMMEQ 662
QS E+ + +++ TTI+ M TQ + F + I+D +E+ +ME+
Sbjct: 959 QSQKQEELEKLQKEIQEKETTIARMTSSKTQFEAMFADVQQTLSKEINDKTEEIERLMER 1018
Query: 663 ADEVQE 680
D +++
Sbjct: 1019 IDSLEK 1024
>Z50872-2|CAA90755.1| 273|Caenorhabditis elegans Hypothetical
protein C05D12.4 protein.
Length = 273
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 211 DNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMFVLFFICRLYNVNS 390
D ++KV++ + ++ K+ + KMR + S + K + +KM CR Y N+
Sbjct: 116 DAFDEKVEENNEVIKNQKESIDKMRISRTETSEEHKELVKKINQKMKDTETACRRYEANT 175
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Frame = +3
Query: 465 EQQLDNLRAQSFNMEQANYAT--QTLKDTHTTISAMKDGVTQMKKEFKKINIDSID---D 629
EQ+L+ + +E + +TL++ S +K + ++ K+ +++ + + +
Sbjct: 679 EQELEAANRELIRLENHDIKLIEKTLRELTMERSTIKSTIDKLDKKTRELQYERVKIDRN 738
Query: 630 VNDELADM-----MEQADEVQEALG 689
+ND ADM EQ D + +ALG
Sbjct: 739 INDWKADMTQCANTEQVDNINDALG 763
>Z54342-12|CAA91145.2| 758|Caenorhabditis elegans Hypothetical
protein C08H9.3a protein.
Length = 758
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -3
Query: 303 IFSRTLPHFAHLILVFSKFCVQFLDFLFNIIGSAMFLMQSVML 175
+ S+T P F+ IL+F +F V F D L+ I A++ +S L
Sbjct: 85 VISKT-PRFSRRILIFQRFSVIFCDILY-IAVCALYSFRSPRL 125
>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
protein Y39B6A.18 protein.
Length = 1352
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/70 (20%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +3
Query: 480 NLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSI-DDVNDELADMM 656
N R QS ME + ++ + +++ +++ V ++ +FK + +DS+ +DV +++D+
Sbjct: 430 NNRTQS-EMEVIEIV-KNIRSNNISLTKIQESVKGIENQFKAVRLDSLKNDVFSKISDVF 487
Query: 657 EQADEVQEAL 686
+ + +++ +
Sbjct: 488 RKDENLKKVI 497
>AL031630-18|CAA21002.1| 278|Caenorhabditis elegans Hypothetical
protein Y38H6C.21 protein.
Length = 278
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 92 FSEPILINLQILLAFLHTRRRQ 27
F+ PIL NL L FLH RRR+
Sbjct: 23 FTLPILNNLTFSLLFLHKRRRK 44
>AL021492-4|CAA16384.1| 492|Caenorhabditis elegans Hypothetical
protein Y45F10D.9 protein.
Length = 492
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/61 (21%), Positives = 33/61 (54%)
Frame = +3
Query: 504 MEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDELADMMEQADEVQEA 683
+E+ + + ++ ++D V +K+E + I + ++D DE+AD+ + + +Q+
Sbjct: 211 VEKLSGVKEEFEEMSEKFKELEDEVELVKEERENIRL-LVEDKEDEVADLKQDTESLQKQ 269
Query: 684 L 686
L
Sbjct: 270 L 270
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +3
Query: 504 MEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDELADMMEQADEVQEA 683
+E+ L+ T T +S ++ + +++ + K + + ++ND+LAD ++ +VQ A
Sbjct: 890 VEEKTSLFTNLESTKTQLSDAEERLAKLEAQQKDAS-KQLSELNDQLADNEDRTADVQRA 948
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 202 GRADNIEQKVQKLDTELRKYKDQMSKMRE 288
G A+++ Q+ +L+ E+R YK +S++ E
Sbjct: 770 GAAESLLQRHARLEEEIRAYKSDISRLEE 798
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +3
Query: 504 MEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDELADMMEQADEVQEA 683
+E+ L+ T T +S ++ + +++ + K + + ++ND+LAD ++ +VQ A
Sbjct: 890 VEEKTSLFTNLESTKTQLSDAEERLAKLEAQQKDAS-KQLSELNDQLADNEDRTADVQRA 948
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 564 MKDGVTQMKKEFKKINIDSIDDVNDELADMMEQ-ADEVQEAL 686
++D V + E+KK +DS D++ EL D +EQ ++V+E +
Sbjct: 2026 VQDAV-ESASEYKKQAVDSGDEIGRELLDNVEQKIEQVKEPI 2066
>Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical
protein W06A7.3d protein.
Length = 570
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 564 MKDGVTQMKKEFKKINIDSIDDVNDELADMMEQ-ADEVQEAL 686
++D V + E+KK +DS D++ EL D +EQ ++V+E +
Sbjct: 112 VQDAV-ESASEYKKQAVDSGDEIGRELLDNVEQKIEQVKEPI 152
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 564 MKDGVTQMKKEFKKINIDSIDDVNDELADMMEQ-ADEVQEAL 686
++D V + E+KK +DS D++ EL D +EQ ++V+E +
Sbjct: 2026 VQDAV-ESASEYKKQAVDSGDEIGRELLDNVEQKIEQVKEPI 2066
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 564 MKDGVTQMKKEFKKINIDSIDDVNDELADMMEQ-ADEVQEAL 686
++D V + E+KK +DS D++ EL D +EQ ++V+E +
Sbjct: 2026 VQDAV-ESASEYKKQAVDSGDEIGRELLDNVEQKIEQVKEPI 2066
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 202 GRADNIEQKVQKLDTELRKYKDQMSKMRE 288
G A+++ Q+ +L+ E+R YK +S++ E
Sbjct: 770 GAAESLLQRHARLEEEIRAYKSDISRLEE 798
>U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical
protein C16C8.16 protein.
Length = 592
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +1
Query: 190 H*KHGRADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMF 351
H K ++ + QKL E K ++ ++M + + KQ+ ++LK++ F
Sbjct: 267 HLKMSETSSLMSQFQKLRVETSKIYNEFTEMVKNETSDMKKQQETQILKEQDEF 320
>U64855-1|AAB04980.1| 594|Caenorhabditis elegans Hypothetical
protein ZK742.2 protein.
Length = 594
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 223 QKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQK 342
Q +KL+ ++ K KD+ K+ E P K+ ++ K + +K K
Sbjct: 365 QYAEKLEVDV-KSKDESEKITESPEKHKIEMKNEKPVKIK 403
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +3
Query: 504 MEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDELADMMEQADEVQEA 683
+E+ L+ T T +S ++ + +++ + K + + ++ND+LAD ++ +VQ A
Sbjct: 893 VEEKTSLFTNLESTKTQLSDAEERLAKLEAQQKDAS-KQLSELNDQLADNEDRTADVQRA 951
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 202 GRADNIEQKVQKLDTELRKYKDQMSKMRE 288
G A+++ Q+ +L+ E+R YK +S++ E
Sbjct: 770 GAAESLLQRHARLEEEIRAYKSDISRLEE 798
>AC006673-11|AAF39920.1| 311|Caenorhabditis elegans Hypothetical
protein K09D9.3 protein.
Length = 311
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -3
Query: 381 IIKSTYK-EKHKHFLLFQYSHCFLLD*IFSRTLPHFAHLILVFSKF 247
+I+ Y+ K+++F ++ H F+ +F RT+PH L+L +S F
Sbjct: 87 LIEFLYRYPKYRYFSVWCTLHIFVAKLVFFRTIPH--SLMLCYSLF 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,960,377
Number of Sequences: 27780
Number of extensions: 309521
Number of successful extensions: 1052
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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