Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9f07
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    40   3e-04
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    36   0.004
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    35   0.013
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    34   0.022
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    28   1.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.5  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   4.5  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   6.0  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   6.0  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 35/100 (35%), Positives = 47/100 (47%)
 Frame = +3

Query: 333 LSENSFTNVTLMADLSIEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAAKLSPHA 512
           + E SFTN  L     +E L L   +I+ IE  S   LQ + VL L  NKLT  K S   
Sbjct: 724 IKELSFTNSNLHR---LEELLLGNNEIEEIEEIS--SLQNLMVLQLDNNKLTNLKAS--- 775

Query: 513 FEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQL 632
                     +P+  +R+L ++ N +H L  D F HL  L
Sbjct: 776 ----------QPMIHLRILRISNNAIHQLEVDQFPHLRTL 805



 Score = 30.7 bits (66), Expect = 0.21
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
 Frame = +3

Query: 333  LSENSFTNVTLM-ADLSIEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAAKLSPH 509
            LS N+F  +      L +  L L+  ++  +       +  +RVLDLS+N ++       
Sbjct: 852  LSNNTFVTLDCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDI----- 906

Query: 510  AFEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQ--DLFEHLPQLEELDISGNPL 662
                    E  +PL  +  L L  N +  +    D+  +L QL  LD+  NPL
Sbjct: 907  --------ESLKPLQMIHRLYLVGNRIKKMRNLCDILANLKQLNVLDLRMNPL 951



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 303 LADFKPKIVDLSENSFTNVTLMADLSIEILNLSRCKIDVIENASFKELQEMRVLDLSYNK 482
           L++  P I +L+      +  +    + I +L+  +  +    SF  L  ++ LD+SYN+
Sbjct: 621 LSELCPSIEELTLEG-NEIAYLTGCPVTIRDLNAVENRLSSLTSFSNLLNLQYLDISYNQ 679

Query: 483 L 485
           L
Sbjct: 680 L 680


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
 Frame = +3

Query: 390 LNLSRCKIDVIENASFKELQEMRVLDLSYNKLT-------------AAKLSPHAFEGKYT 530
           L  S CK+  I    F  LQ +  LDLS N+LT             +  L+ +   G  T
Sbjct: 337 LRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRT 396

Query: 531 PEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGNPLTTI 671
              +  L+ +++L L+ N L SL+    E++P LE+LDI  N +T +
Sbjct: 397 -FYHISLSHLQILVLSRNHLTSLSG--LENVPSLEKLDIRDNSITDV 440



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 588 LHSLNQDLFEHLPQLEELDISGNPLTTIDH 677
           L S+ +++F  L  L  LD+SGN LT I +
Sbjct: 344 LKSIPKNVFLSLQSLVSLDLSGNELTEIPY 373


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +3

Query: 507 HAFEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGNPLTTI 671
           H    K++   ++P A+ +  N     + +L++  FE  P L+E D+SG+P   I
Sbjct: 578 HNEASKFSHTSFDPKASSKSSNSLKESVEALSEIPFEDAPALDESDLSGDPFWAI 632


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
 Frame = +3

Query: 390 LNLSRCKIDVIENASFKELQEMRVLDLSYNKLT---------AAKLSPHAFEGKYTPEQY 542
           L++SR  ++VI    +    E+  L++S+N              KL            + 
Sbjct: 410 LDISRSNLEVIPVKIYPYAHELISLNVSHNLSLDLPLDFMERCVKLKRLDISNNLRSPRG 469

Query: 543 EPLAAMR---VLNLAYNDLHSLNQDLFEHLPQ--LEELDISGNPLTTIDHVT 683
           +P+ A+R   VLN++ ND++ L+  +F  L +  L+EL+I+ N L  + H T
Sbjct: 470 KPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFFLPHST 521



 Score = 33.5 bits (73), Expect = 0.030
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 543 EPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGNPLTTI 671
           E    ++VLNL+YN L  +    F++   L+ L +SGN L  +
Sbjct: 827 EYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELANL 869



 Score = 30.7 bits (66), Expect = 0.21
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 16/108 (14%)
 Frame = +3

Query: 381  IEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAAKLSPHA---FEGKYT------- 530
            +++LNLS   +  I +  F+   +++ L +S N+L    +S  A    E  Y        
Sbjct: 832  LKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELANLSISSTAQVLLETLYANGNRLSS 891

Query: 531  -PEQYEPLAAMRVLNLAYNDLHSLNQDLFEH-----LPQLEELDISGN 656
             P+      ++R L+++ N+L +L  +  E      LPQLE L++SGN
Sbjct: 892  FPKNEALSKSLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGN 939


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
 Frame = +3

Query: 378 SIEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAAKLSPHAFEGKYTPEQYEPLAA 557
           S+E+L L   +I + +  SFK LQ ++ L L+ N      L+ ++ +G Y  + ++    
Sbjct: 218 SLEVLYLEANEIILSKATSFKNLQFLQTLSLANN------LNLYSADG-YAVDVFQ---G 267

Query: 558 MRVLNLAYNDLHSLNQDLFEHLPQLEELDISGN---PLTTIDHV 680
           +  LNL+   L  + +     L +L  LDIS N    + ++DH+
Sbjct: 268 INNLNLSSTSLADVAELPVHTLHKLTFLDISENNIRDIRSLDHL 311


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/95 (22%), Positives = 41/95 (43%)
 Frame = +3

Query: 261  QNLDTFFSKEEWAALADFKPKIVDLSENSFTNVTLMADLSIEILNLSRCKIDVIENASFK 440
            Q    + ++ EW  L+ F+P I   + +    V  +A LS+  L L   K+     +  K
Sbjct: 950  QYAQPYGNENEWTGLSQFEPLIFKCTASRICKVREIASLSLTCL-LDCSKMTTFIVSQLK 1008

Query: 441  ELQEMRVLDLSYNKLTAAKLSPHAFEGKYTPEQYE 545
             +  ++  ++ + KL   +     F  K T +Q +
Sbjct: 1009 GVAGLQQNEI-HGKLLTIRAVLSCFFSKLTLQQVQ 1042


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
 Frame = +3

Query: 354 NVTLMADLSIEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAA----KLSPHAFEG 521
           N  LM  L+ +I  L R   DV +     E +E     ++  KL+A+         A E 
Sbjct: 654 NTNLMEILNDKISVLQRQLTDVKDELDVSE-EEREEAIVAGQKLSASFELMSNEKQALEL 712

Query: 522 KYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFE 617
           KY+  + E + A  +L+    +L  L++ LFE
Sbjct: 713 KYSSLKNELINAQNLLDRREEELSELSKKLFE 744


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 564 VLNLAYNDLHSLNQDLFEHLPQLEELDISGNPLTTIDHV 680
           +++L  NDLH L +    H+P+L  ++   N  + + ++
Sbjct: 560 IIDLIRNDLHQLAKKNSVHVPELYSVEEHSNVYSLLSNI 598


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 78  IFKKMGWAVAIFVFLFIAGAHC-EDVK 155
           +FKK  W   ++VFLFI  A+C  DVK
Sbjct: 26  VFKKTQW--LLYVFLFIIFANCVVDVK 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,135
Number of Sequences: 5004
Number of extensions: 53643
Number of successful extensions: 194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)