Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9f06
         (605 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           28   0.20 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    28   0.27 
X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             26   1.1  
AF364132-1|AAL35508.1|  397|Anopheles gambiae putative odorant r...    25   2.5  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   4.4  
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        23   5.8  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 28.3 bits (60), Expect = 0.20
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -1

Query: 500  SIPSFLGIAPTRKAAATSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAISR 330
            S PS   +A T       ++AS   A    PAK+    S N + TP+S  + G + R
Sbjct: 925  STPSTSAMAAT--IVPNPVQASPSPATAPAPAKTTSTDSTNGLETPTSETVGGGMHR 979


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 27.9 bits (59), Expect = 0.27
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -3

Query: 408 SQKWQSTVSQLHDNTFKYTHHRRNIKKVEEDRLLRSKNCSRRNLIKK 268
           S K + +  Q+H   FK  H+ +  K+++ED++ + +     N+I+K
Sbjct: 221 SLKQECSEKQVHFQLFKLYHNEKEAKRLKEDQISKQQEL---NIIEK 264


>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 603 VANNKDLHIFTSH-FVQSLALLFEDAHISSKKILPLHTF 490
           V +    H++TS  F + LAL  ++A  ++ +I+P+ TF
Sbjct: 525 VVDTPQKHLYTSSPFSEFLALDMKEAPTTNPRIVPIPTF 563


>AF364132-1|AAL35508.1|  397|Anopheles gambiae putative odorant
           receptor Or4 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 272 FIKLRLEQFLDLSNLSSSTFLILR 343
           F ++ LE+F  + NLS S +++L+
Sbjct: 366 FFRVNLEEFSRIVNLSYSAYVVLK 389


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 579  IFTSHFVQSLALLFEDAHISSKKIL 505
            + T   + SLAL  ED H+  + IL
Sbjct: 1311 VITMILLSSLALALEDVHLPQRPIL 1335


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 567 HFVQSLALLFEDAHISSKKILPL 499
           HF+Q    L  DA +  + ILPL
Sbjct: 502 HFLQYAQDLISDAKVKGRPILPL 524


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,800
Number of Sequences: 2352
Number of extensions: 12615
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58870980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)