Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9f02
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    33   0.15 
Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U55364-5|AAQ23124.1|  368|Caenorhabditis elegans Prion-like-(q/n...    29   2.5  
AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    29   4.4  
U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U64601-10|AAP40523.1|   91|Caenorhabditis elegans Hypothetical p...    28   5.8  
U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-lik...    28   5.8  
Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = +3

Query: 153 NCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSCGSATDSTL 332
           NC   +    TT  S  +  T T A +                T  ST  S  ++TDST 
Sbjct: 171 NCNVLTDIPVTTTTSTTSSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTT 230

Query: 333 SESTSPITLDSS 368
           +EST+  T +S+
Sbjct: 231 TESTTESTTEST 242



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +3

Query: 144 SRRNCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSCGSATD 323
           S    TTA+S   +T+ S  +  T +   +                T  ST  S  ++TD
Sbjct: 188 SSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTSTSTD 247

Query: 324 STLSESTSPIT 356
           ST +ESTS  T
Sbjct: 248 STTTESTSTST 258


>Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical
           protein F53C11.7 protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
 Frame = +2

Query: 440 PANERLAYGDGKEKNSDLI--SWKFITLW----ENNRVYFKIHNTKYN-QYLKLSSTTDC 598
           PA + +   D K    DL+  S  ++ LW    +NN     + NT    +Y    ++ D 
Sbjct: 204 PATKIMWIPDQKGTFPDLLATSGDYLRLWRIGTDNNACIESLLNTNRTAEYCAPLTSFDW 263

Query: 599 NTQDRVIFGTNTADTTREQWFLQ 667
           N  D  + GT++ DTT   W L+
Sbjct: 264 NELDMNLIGTSSIDTTCTVWQLE 286


>U55364-5|AAQ23124.1|  368|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
           isoform b protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
 Frame = +2

Query: 47  MKFLVVFASCVLAVSA-GVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEY-EN 220
           M+FL + + CVLAV+A   +  S       ++  +   Y S      + A  Q ++Y +N
Sbjct: 1   MQFLTILSVCVLAVAAQQQSAYSTNQQYQPSQGAQYDQYGSSTLQYNNGATAQPIQYNQN 60

Query: 221 QGKGSIIQNVVNNLIIDKSRNTMEYCYKLWVGNGQH 328
           Q  GS  Q   N +     +N+ +Y     + N Q+
Sbjct: 61  QQYGSTAQYNQNQM--QNQQNSNQYSTTSNMNNQQN 94


>AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical
           protein F25E5.8b protein.
          Length = 176

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -2

Query: 127 AHASRGHF---SDAGADGEHARREHHEKFHY-HSCLF 29
           A  S G+F   S+ G  G H   EHH K H+ HS  F
Sbjct: 25  ASRSTGNFEEGSEEGTSGSHKPEEHHHKEHHGHSLYF 61


>AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical
           protein F25E5.8a protein.
          Length = 235

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -2

Query: 127 AHASRGHF---SDAGADGEHARREHHEKFHY-HSCLF 29
           A  S G+F   S+ G  G H   EHH K H+ HS  F
Sbjct: 25  ASRSTGNFEEGSEEGTSGSHKPEEHHHKEHHGHSLYF 61


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +3

Query: 135 TKNSRRNCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSCGS 314
           T +S  + +T +S VTTT ++     T T    P               TP +T+T+  +
Sbjct: 276 TTSSTTSTSTTTSVVTTTTVTSTTEPT-TSTSTPTTTTTMQTTTPSTTSTPTTTSTTTTT 334

Query: 315 ATDSTLSESTSPIT 356
           +  +T   +T P T
Sbjct: 335 SASTTTISTTKPPT 348


>U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical
           protein ZK1248.9 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +2

Query: 476 EKNSDLISWKFITLWENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGTNTADTTREQ 655
           EKN D    K     + N + +   +T Y   + L S  DCN     +F  N ADT  ++
Sbjct: 115 EKNPDFFKMK-----DGNHIVYDGQSTLYTT-INLFSELDCNQTKSKVFQINGADTGNDE 168


>U64601-10|AAP40523.1|   91|Caenorhabditis elegans Hypothetical
           protein M03F4.7b protein.
          Length = 91

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 130 TAHASRGHFSDAGADGEHARREHHEKFHYH 41
           TA AS  H SD   DGEH + + H+K + H
Sbjct: 13  TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical
           protein M03F4.7a protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 130 TAHASRGHFSDAGADGEHARREHHEKFHYH 41
           TA AS  H SD   DGEH + + H+K + H
Sbjct: 13  TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-like
           protein protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 130 TAHASRGHFSDAGADGEHARREHHEKFHYH 41
           TA AS  H SD   DGEH + + H+K + H
Sbjct: 13  TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical
           protein T23F11.5 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = -3

Query: 630 LVPNITRS*VLQSVVELSFKYWLYLVLWILKYTLLFSHKVMNFQLMRSLFFSLPSPYASL 451
           L  NI+    +    + S+   L L+ +I++ TLL  + ++NF ++R   FS  + +   
Sbjct: 7   LSSNISYDDPISFECDTSYDSGLELLKYIIQVTLLSINFILNFLIIRVTMFSKNNDFREN 66

Query: 450 SF 445
           SF
Sbjct: 67  SF 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,678,203
Number of Sequences: 27780
Number of extensions: 303364
Number of successful extensions: 1084
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)