Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9e24
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    47   2e-06
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    27   1.5  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    27   2.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   6.2  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   6.2  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   8.3  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   8.3  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    25   8.3  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 23/44 (52%), Positives = 27/44 (61%)
 Frame = +3

Query: 450 KSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPF 581
           KSIR AF+RKVYAIL  QL VT  F  +F  H     WV  +P+
Sbjct: 52  KSIRMAFLRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPW 95


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 230 WTVPTGWRLPARWSLPSRRSVSPGWSIP 313
           W V +   +P+RW   +   ++P W IP
Sbjct: 350 WNVYSKKDIPSRWHYSNNERIAPVWMIP 377


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 212 TLRVRPALRVRSALILIISRCSNFYTMNFTID-SLDKYNLRR 90
           T+ V  ALRV    +L++   S   +   T+D  + +YN+ R
Sbjct: 159 TIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVPR 200


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -1

Query: 347 EARLRGRISALRVCSTRGIRSSWRVSSTLRVTSTLWVRSTLRV 219
           EA++R R++ + +   RG+     +   +++   LWV   + V
Sbjct: 853 EAKIRSRVNLIALSLERGLGIIRSLGEAVQLAPALWVEDAIDV 895


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +2

Query: 146 LNIGRLSESRRTVPSGRGVPARWTVPARWTVPTGWRLPARWSLPSRRSVSPGWSIPAGRI 325
           L+   +S S  T P    VP   ++ +  T+PT   +P   S P+  S+    +IP+   
Sbjct: 86  LSNSTISTSSST-PITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSS 144

Query: 326 CAPSAWLPTCI 358
            + S    T I
Sbjct: 145 ISASTITTTII 155


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 470 HPKGVRDPDVSADGDDGFHRSVP 538
           +P  V   D   DGDD  H SVP
Sbjct: 496 NPGYVTSDDFGEDGDDTVHTSVP 518


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 551 RSVVQEQSDETHRHHQLTHQDRVHLSD 471
           R  V++  D+ H H + T +D++ +SD
Sbjct: 911 RGQVKKAVDQEHGHFRATFEDKILMSD 937


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/20 (45%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -3

Query: 327 HIRPAG-MLHPGDTLLLEGK 271
           +++P G +LHPGD L++ G+
Sbjct: 302 YVQPIGKILHPGDCLIIPGE 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,428
Number of Sequences: 5004
Number of extensions: 46295
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)