Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9e24
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    36   0.016
Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical p...    35   0.038
Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical pr...    35   0.038
U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    29   3.3  
U28740-4|AAA68319.2|  276|Caenorhabditis elegans Temporarily ass...    28   4.3  
AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical ...    27   7.5  
AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical ...    27   7.5  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    27   10.0 

>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 441 FTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFW 590
           F+ +++R AF+RKV+ ++     +T  F  + +   P + WV  N   FW
Sbjct: 22  FSSQTVRAAFVRKVFMLVTIMFAITAAFCVIPMVSEPFQDWVKNN---FW 68


>Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1a protein.
          Length = 296

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 417 DGEVKGFDFTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMF 587
           DG+   F F++K++R AF+RKV++++   L +      +   H  T   V +N  ++
Sbjct: 67  DGKYS-FQFSDKTVRAAFVRKVFSLVFIMLCIVAAVTVIPWVHDDTMRMVRRNSALY 122


>Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1b protein.
          Length = 296

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 417 DGEVKGFDFTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMF 587
           DG+   F F++K++R AF+RKV++++   L +      +   H  T   V +N  ++
Sbjct: 67  DGKYS-FQFSDKTVRAAFVRKVFSLVFIMLCIVAAVTVIPWVHDDTMRMVRRNSALY 122


>U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical
           protein C18H9.3 protein.
          Length = 918

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +1

Query: 202 TRKVDRTRKVDRTHRVEVTRKVELTL-----QEERIPRVEHTRRADMRPLSLASNLHMAA 366
           +++V  T+      +VE  +K E TL     +EER  +VE  + A ++    ASN+  AA
Sbjct: 718 SKEVKHTKTAPWAAKVEAPQKSEKTLLEIQKEEERKFKVEQEKNAKLKAKEQASNITSAA 777

Query: 367 LVTVNRA 387
            +  +++
Sbjct: 778 AIAGDKS 784


>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
           protein Y20F4.4 protein.
          Length = 1319

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +2

Query: 140 RSLNIGRLSESRRTVPSGRGVPARWTVPARWTVPTGWRLPARWSLPSRRSVSPGWSIP 313
           RS + GR   +RR+ P G   P  +T+P   + P    +     +P  R   P  S P
Sbjct: 435 RSQSRGRSEATRRSPPKGPSAPPAYTLPFGGSTPNHEPMDLEDPVPPPRPDRPRASTP 492


>U28740-4|AAA68319.2|  276|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 132 protein.
          Length = 276

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 408 VGEDGEVKG-FDFTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRP 551
           V  DG + G      + IR AF+RKV  I+  QL+ T+G  A  +Y+ P
Sbjct: 52  VDADGILPGCVGKANRMIRIAFLRKVLGIVGFQLLFTIGICAA-IYNIP 99


>AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical
           protein ZK973.9 protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 539 QEQSDETHRHHQLTHQDRVHLSD 471
           Q ++DE  +H QL H++ +HLS+
Sbjct: 32  QSRADEAIKHQQLLHRNLLHLSN 54


>AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical
           protein C45H4.14b protein.
          Length = 131

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/75 (18%), Positives = 35/75 (46%)
 Frame = +1

Query: 205 RKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRADMRPLSLASNLHMAALVTVNR 384
           +K+D  +K +  HR +  R+ +    +E+  + +   + + + L            ++ R
Sbjct: 19  KKLDEKKKTEEKHRAKQERQAQKKGAKEQAKKEKAELKKEAKELLKKEKAEERKKESLKR 78

Query: 385 AISHRTTQSAKMAKS 429
            +S ++  +AK AK+
Sbjct: 79  KLSEKSEPAAKKAKA 93


>AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical
           protein C45H4.14a protein.
          Length = 178

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/75 (18%), Positives = 35/75 (46%)
 Frame = +1

Query: 205 RKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRADMRPLSLASNLHMAALVTVNR 384
           +K+D  +K +  HR +  R+ +    +E+  + +   + + + L            ++ R
Sbjct: 66  KKLDEKKKTEEKHRAKQERQAQKKGAKEQAKKEKAELKKEAKELLKKEKAEERKKESLKR 125

Query: 385 AISHRTTQSAKMAKS 429
            +S ++  +AK AK+
Sbjct: 126 KLSEKSEPAAKKAKA 140


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -1

Query: 263 LRVTSTLWVRSTLRVRSTLRVRPALRVRSALILIISRCSNFYTMNFTIDSLDKYNLRRFR 84
           LR    +  + T+  + T   R  L ++ +   IIS C  F+T N   ++L K  L +  
Sbjct: 80  LRDLDEMAEKFTILKKITQDDRELLEMKYSSPEIISNCDYFHTFNALKENLAKNVLNKLN 139

Query: 83  *TQSI 69
            T+SI
Sbjct: 140 ITESI 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,739,559
Number of Sequences: 27780
Number of extensions: 274945
Number of successful extensions: 985
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)