Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9e22
         (626 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.4  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.4  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 501 DQRKC**NEKYRARCTYCRDWRSVQEG 581
           +++ C  +++ R RC YCR  + +  G
Sbjct: 124 EEKNCIIDKRQRNRCQYCRYQKCLNMG 150


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 502 ISENVDKTKNTERVVPIVETGAPYKKDEPVXKDDSRKPW 618
           I E V   +  +RVV  V+  A Y+K+      +   P+
Sbjct: 164 IVETVYDPREDDRVVCYVQAAARYRKEPLAFSPEDLDPF 202


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = -3

Query: 222 PQRSKQTEWRKVQPWERELVICNGDGLRDNFFVP 121
           P +     W  V  W   L + N   + D FF P
Sbjct: 621 PHQQHLDAWYWVMDWSDMLSVGNMTLILDKFFFP 654


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 250 RCPQKWGSASTKEQTD 203
           +CP+K+G  +  EQ D
Sbjct: 38  QCPEKYGFFADAEQCD 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,880
Number of Sequences: 336
Number of extensions: 2021
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)